Clavibacter sepedonicus

Clavibacter sepedonicus
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Actinomycetota
Class: Actinomycetia
Order: Micrococcales
Family: Microbacteriaceae
Genus: Clavibacter
Species:
C. sepedonicus
Binomial name
Clavibacter sepedonicus
(Spieckermann and Kotthoff 1914) Li et al. 2018[1][2]
Type strain
ATCC 33113
CCUG 23908
CFBP 2049
CIP 104844
DSM 20744
ICMP 2535
JCM 9667
LMG 2889
NCPPB 2137
VKM Ac-1405[3]
Synonyms[3]
  • Clavibacter sepedonicus (Spieckermann and Kotthoff 1914) Nouioui et al. 2018
  • "Bacterium sepedonicum" Spieckermann and Kotthoff 1914
  • Corynebacterium michiganense subsp. sepedonicum (Spieckermann and Kotthoff 1914) Carlson and Vidaver 1982
  • Corynebacterium sepedonicum (Spieckermann and Kotthoff 1914) Skaptason and Burkholder 1942 (Approved Lists 1980)
  • Clavibacter michiganensis subsp. sepedonicum (Spieckermann and Kotthoff 1914) Davis et al. 1984
  • Clavibacter michiganense subsp. sepedonicum (Spieckermann and Kotthoff 1914) Davis et al. 1984
  • Clavibacter michiganense subsp. sepedonicus (Spieckermann and Kotthoff 1914) Davis et al. 1984
  • Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al. 1984

Clavibacter sepedonicus is a species of bacteria in the genus Clavibacter.[1][2] C. sepedonicus is a high-profile alien plant pathogen of A2 Quarantine status affecting only potatoes. It causes a disease in potatoes known as 'ring rot' due to the way it rots vascular tissue inside potato tubers[4] It is present in parts of Europe but is under statutory control under 'Council Directive 93/85/EEC' of 4 October 1993 on the control of potato ring rot. This means that if an outbreak occurs, the outbreak must be controlled and if possible the disease has to be eradicated. If necessary, prohibitions are put into place to prevent further spread.

A plant showing symptoms of ring rot should be reported to the local plant health authority.

Hosts and symptoms

C. sepidonicus is an economically important pathogen because it affects only potato, which was the 12th highest ranking commodity in 2009, generating $44,128,413,000 globally.[5] Like all bacteria in the genus Clavibacter, C. sepidonicus causes a systemic vascular infection by invading the xylem vessels and multiplying there which sometimes leads to plugged xylem vessels. When diagnosing a C. sepidonicus infection in potato, look for discoloration of the vascular ring within the tuber that has been described as "glassy" or "water-soaked" with the ooze inside having a "cheese-like consistency".[6][7]

Symptoms of potato 'ring rot' are yellowing of the leaf margins which later turn brown and look like they are burned. Tubers rot from the inside, sometimes progressing to leave hollow shells. Rotting of the tubers is the more common symptom. Infected land cannot be used again for susceptible crops for several years. Among others, United States, Canada, many EU states and Middle Eastern countries have not yet been able to eradicate this pathogen.

Disease cycle

The causal agent of Ring Rot of Potato overwinters many different ways. The bacteria survives in infected tubers in both storage and in the field. Diseased tubers then infect newly planted tubers. The bacterium also may be foundas dried slime on machinery or containers. For instance, if a knife cuts into an infected tuber, the next 20 tubers that the knife cuts have a high risk of becoming infected.[8] The bacteria enters the host through wounds and invades the xylem where it multiplies via binary fission. If colonization is successful, the bacteria may plug the xylem vessels. In advanced stages of infection, the bacteria will move out of the vessels and break down the surrounding parenchyma tissue before moving into new vessels. The bacteria may also invade the roots and cause them to deteriorate.[8]

C. sepidonicus spreads by contaminated soil, surfaces, infected seed, wash waters, infected potato waste, etc. It can survive on warehouse walls, boxes, bags etc. On machinery in dry conditions, it can survive at least a month – sometimes in the form of dried bacterial ooze. It is also able to overwinter in soil in association with plant debris. C. sepidonicus will only survive in the soil as long as the host tissue in which it resides persists and resists decomposition by saprophytic microorganisms in the soil. This poor ability to compete as a saprophyte in the absence of a susceptible host makes Clavibacter sp. known as soil invaders as opposed to soil inhabitants.[8]

Environment

North, Northwest and Central Europe have favorable climates for virulence. The disease multiplies rapidly and survives longer in cooler environments around 21 °C. At favorable conditions, the pathogen can survive 63 months in infected potato stems and 18 months in burlap sacks.[9]

Management

In the UK, DEFRA Plant Health and Seed Inspectors (PHSI) and SEERAD carry out annual survey work on ware and seed potatoes. Samples are sent to the Fera Science which was formerly known as The Central Science Laboratory (for England and Wales) and to Scottish Agricultural Science Agency (SASA) (for Scotland) for latent infection testing (infected but not showing symptoms). Infected crops once identified are intercepted, impounded, and destroyed. additional text. In the EU, quarantine facilities and licences are required to obtain, hold, and/or work with the bacteria and in the UK, Department of Trade and Industry (DTI) export licences are required to export it to countries outside of the EU whether through a third party country or not. The last known outbreak in the UK was in August 2004.[10]

There are no chemicals to treat ring rot of potato. There are no resistant varieties either. If a tuber tests positive for Clavibacter sepidonicus, proper authorities should be immediately contacted as this is a quarantine disease in the United States as well Europe.[6]

Subsp. sepidonicus presents a danger of long-distance dispersal due to its ability to survive in seeds.[11]

References

  1. 1 2 Spieckermann A, Kotthoff P. (1914). "Untersuchungen über die Kartoffelpflanze und ihre Krankheiten" [Studies on the potato plant and its diseases]. Landwirtschaftliche Jahrbucher Berlin. 46: 659–732.
  2. 1 2 Li X, Tambong J, Yuan KX, Chen W, Xu H, Levesque CA, De Boer SH. (2018). "Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses". Int J Syst Evol Microbiol. 68 (1): 234–240. doi:10.1099/ijsem.0.002492. PMC 5882085. PMID 29160202.
  3. 1 2 Euzéby JP, Parte AC. "Clavibacter sepedonicus". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 29, 2022.
  4. ↑ Manzer F, Genereux H.1981.Ring Rot. In Compendium of Potato Disease, ed. WJ Hobson, pp. 31–32.St Paul, MN:Am Phytopathol.Soc.Press
  5. ↑ Food and Agriculture Organization of the United Nations. http://faostat.fao.org/site/339/default.aspx
  6. 1 2 (2009). Bacterial rots of potato tubers. Retrieved from United Kingdom Food and Environment Research Agency website: http://www.fera.defra.gov.uk/plants/publications/documents/factsheets/bacterialRotsPotato.pdf Archived 8 November 2011 at the Wayback Machine
  7. ↑ Evtushenko LI, Takeuchi M. 2006. The family Microbacteriaceae. In "The Prokaryotes", 3rd edition, ed. M Dworkin, S Falkow, E Rosenburg, KH Schleifer, E Stackenbrandt, 3:1020–99. New York: Springer
  8. 1 2 3 Agrios, George N (2005). Plant Pathology, Burlington, MA: Elsevier Academic Press. ISBN 978-0-12-044565-3.
  9. ↑ "Archived copy" (PDF). Archived from the original (PDF) on 23 April 2011. Retrieved 2011-10-26.{{cite web}}: CS1 maint: archived copy as title (link), CABI and EPPO for the EU. "Clavibacter michiganensis subsp. sepedonicus", EPPO quarantine pest. Retrieved on 2011-10-26.
  10. ↑ "Archived copy" (PDF). Archived from the original (PDF) on 17 May 2011. Retrieved 2011-10-25.{{cite web}}: CS1 maint: archived copy as title (link), CABI and EPPO for the EU. "Clavibacter michiganensis subsp. michiganensis", EPPO quarantine pest. Retrieved on 2011-10-26.
  11. ↑ Bugbee WM, Gudmestad NC. 1988. The recovery of Corneybacterium sepidonicum from sugarbeet seed. Phytopathology 78:205-8
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