Arlequin (software)

Arlequin is a free population genetics software distributed as an integrated GUI data analysis software.[1] It performs several types of tests and calculations, including Fixation index (Fst, also known as the "F-statistics"[2]), computing genetic distance, Hardy–Weinberg equilibrium, linkage disequilibrium, analysis of molecular variance, mismatch distribution, and pairwise difference tests. The software is designed to be able to handle different kinds of molecular, non-molecular, and/or frequency type data.[3]

For other uses, see Arlequin (disambiguation).
Arlequin
Stable release
'v3.5.2.2.,' '2008'
Operating systemMicrosoft Windows, Mac OS, and Linux
Websitehttp://cmpg.unibe.ch/software/arlequin35/

About

The Arlequin is a software package that integrates basic and advanced levels/methods for population genetics and data analysis.[4]

Version 3.5.2.2[1] is available only on Microsoft Windows as zip archive and installation executables.[1]

Mac OS X and Linux have only older 3.5.2 version but restricted on 64-bit environments and have only command-line interface as the "arlecore"[5] program, "arlsumstat"[6] program, as well as the example files.

In 2019, the new R functions were integrated into the Arlequin software. The new R functions are able to integrate the software into zip files for Windows, Mac and Linux versions.[7]

References
  1. "Arlequin ver 3.5.2.2 (released on 02.08.2015)". 2015-08-02. Retrieved 2017-01-17.
  2. Liu, Chun-Fang; Li, Cui; Zhang, Zhen; Wang, Hai-Yan (March 2015). "中国沿海不同地区泥蚶(Tegillarca granosa)的遗传多样性分析" [Genetic diversity of different populations of tegillarca granosa in coastal waters of Chinabased on partial COI gene sequences]. Oceanologia et Limnologia Sinica (in Simplified Chinese). 46 (2): 364–371. doi:10.11693/hyhz20140400105.
  3. "Arlequin: About Arlequin". cmpg.unibe.ch. Retrieved 2023-04-07.
  4. Excoffier, Laurent; Laval, Guillaume; Schneider, Stefan (2007-02-23). "Arlequin (version 3.0): An integrated software package for population genetics data analysis". Evolutionary Bioinformatics Online. 1: 47–50. ISSN 1176-9343. PMC 2658868. PMID 19325852.
  5. "ARLECORE (v 3.5.2) README.txt". April 2015. Retrieved 2017-01-17.
  6. "ARLSUMSTAT (v 3.5.2) README.txt". December 2009. Retrieved 2017-01-17.
  7. "Arlequin 3.5". cmpg.unibe.ch. Retrieved 2023-03-30.
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