Cytochrome c nitrite reductase

Cytochrome c nitrite reductase (ccNiR) (EC 1.7.2.2) is a bacterial enzyme that catalyzes the six electron reduction of nitrite to ammonia; an important step in the biological nitrogen cycle.[2] The enzyme catalyses the second step in the two step conversion of nitrate to ammonia, which allows certain bacteria to use nitrite as a terminal electron acceptor, rather than oxygen, during anaerobic conditions. During this process, ccNiR draws electrons from the quinol pool, which are ultimately provided by a dehydrogenase such as formate dehydrogenase or hydrogenase. These dehydrogenases are responsible for generating a proton motive force.[3]

Cytochrome c nitrite reductase
Crystallographic structure of a homodimer of the cytochrome c nitrite reductase from Escherichia coli (rainbow colored cartoon, blue = N-terminus, red = C-terminus) complexed with heme C (sticks).[1]
Identifiers
EC no.1.7.2.2
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum
Gene OntologyAmiGO / QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins

Cytochrome c Nitrite Reductase is a homodimer which contains five c-type heme cofactors per monomer.[4] Four of the heme centers are bis-histidine ligated and presumably serve to shuttle electrons to the active site. The active site heme, however, is uniquely ligated by a single lysine residue.

This enzyme belongs to the family of oxidoreductases, specifically those acting on other nitrogenous compounds as donors with a cytochrome as acceptor. The systematic name of this enzyme class is ammonia:ferricytochrome-c oxidoreductase.

Cytochrom_NNT
Identifiers
SymbolCytochrom_NNT
PfamPF03264
Pfam clanCL0317
InterProIPR005126
OPM superfamily175
OPM protein2j7a
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary

References

  1. PDB: 1GU6; Bamford VA, Angove HC, Seward HE, Thomson AJ, Cole JA, Butt JN, Hemmings AM, Richardson DJ (March 2002). "Structure and spectroscopy of the periplasmic cytochrome c nitrite reductase from Escherichia coli". Biochemistry. 41 (9): 2921–31. doi:10.1021/bi015765d. PMID 11863430.
  2. Clarke TA, Mills PC, Poock SR, Butt JN, Cheesman MR, Cole JA, Hinton JC, Hemmings AM, Kemp G, Söderberg CA, Spiro S, Van Wonderen J, Richardson DJ (2008). "Escherichia coli cytochrome c nitrite reductase NrfA". Meth. Enzymol. Methods in Enzymology. 437: 63–77. doi:10.1016/S0076-6879(07)37004-3. ISBN 9780123742780. PMID 18433623.
  3. Simon J (August 2002). "Enzymology and bioenergetics of respiratory nitrite ammonification". FEMS Microbiol. Rev. 26 (3): 285–309. doi:10.1111/j.1574-6976.2002.tb00616.x. PMID 12165429.
  4. Einsle O, Messerschmidt A, Stach P, Bourenkov GP, Bartunik HD, Huber R, Kroneck PM (July 1999). "Structure of cytochrome c nitrite reductase". Nature. 400 (6743): 476–80. Bibcode:1999Natur.400..476E. doi:10.1038/22802. PMID 10440380. S2CID 4403452.

Further reading


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