Karl Berger

• From Now On (ESP Disk, 1967)[12][14][15]
• Tune In (Milestone, 1969)[12][14]
• We Are You (Calig, 1972)[12][14][15]
• With Silence (Enja, 1972)[12][14][15]
• All Kinds of Time (Sackville, 1976)[12][14][15][16]
• Interludes (FMP, 1977)[12][14]
• Changing the Time (Horo, 1977)[12][14]
• Just Play (1976) (Quark, 1979)[12][14][15]
• New Moon (Palcoscenico, 1980)[14][15]
• Live at the Donaueschingen Music Festival (MPS, 1979)[13][14]
• Transit (Black Saint, 1987)[12][14][15][16]
• Karl Berger + Paul Shigihara (L+R/Bellaphon, 1991)[16]
• Around (Black Saint, 1991)[14]
• Sudpool Jazz Project II: Moon Dance (L+R/Bellaphon, 1992)
• Crystal Fire (Enja, 1992)[14][15][16]
• Conversations (In+Out, 1994)[14][15][16]
• No Man Is an Island (Douglas Music, 1997)[14][15]
• Stillpoint (Double Moon, 2002)[12][14]
• Strangely Familiar (Tzadik, 2010)[12][14][15]
• Synchronicity (Nacht, 2012)[15]
• After the Storm (FMR, 2012)[12][14][15]
• Gently Unfamiliar (Tzadik, 2014)[12][14]
• Moon (NoBusiness, 2015)[12][14][15]
• Live at the Classical Joint (Condition West, 2017)[12]
• In a Moment (Tzadik, 2018)[12]
• Conjure (True Sound, 2019)[12]
• Sketches (Fresh Sound, 2022)[12][15]
• Heart is a Melody (Stunt, 2022)[12]

With Don Cherry

• Togetherness (Durium, 1966)[17]
• Live at Cafe Montmartre 1966 Vols. 1–3 (ESP Disk, 1966)[18]
• Symphony for Improvisers (Blue Note, 1966)[13]
• Eternal Rhythm (MPS, 1969)[7]
• Multikulti (A&M, 1990)[7]

With Bill Laswell

• Jazzonia (Douglas Music, 1998)[6][19]
• Filmtracks 2000 (Tzadik, 2001)[20]
• Points of Order (Innerhythmic, 2001)[21]

With Ivo Perelman

• Reverie (Leo, 2014)[14][15][16]
• The Art of the Improv Trio Vol. 1 (Leo, 2016)[14][16]
• The Hitchhiker (Leo, 2016)[14]

With others

• Better Than Ezra, How Does Your Garden Grow? (Elektra, 1998)[8]
• Carla Bley, Escalator Over the Hill (JCOA, 1971)[22]
• Anthony Braxton, Creative Orchestra Music 1976 (Arista, 1976)[23]
• Buckethead, Giant Robot (CyberOctave, 2000)[9]
• Jeff Buckley, So Real: Songs from Jeff Buckley (Legacy/Columbia, 2007)[10]
• Neneh Cherry, Broken Politics (Smalltown Supersound, 2018)[24]
• Chocolate Genius, Black Music (Everlasting, 1998)[25]
• Coheed and Cambria, Good Apollo I'm Burning Star IV (Columbia, 2005)[26][27]
• Lajos Dudas, Talk of the Town (Double Moon, 2000)[7]
• Slide Hampton, Jazz Live Trio with Guests (TCB, 2013)[28][29]
• Theo Jorgensmann, Fellowship (hatOLOGY, 2005)[30][31]
• Kalaparusha, Kalaparusha (Trio, 1977)[32]
• Hans Koller, Big Sound Koller (Sonorama, 2016)[33]
• Lee Konitz, The Lee Konitz Duets (Milestone, 1968)[34]
• Lee Konitz, Seasons Change (Circle, 1980)[14]
• Rolf Kuhn & Joachim Kuhn, Transfiguration (SABA, 1967)[14]
• Sylvain Leroux, Quatuor Créole (Engine Studios, 2012)[35]
• John Lindberg, Duets 1 (Between the Lines, 2006)[13][16]
• Machine Gun, Machine Gun (MU, 1988)[36]
• Magpie Salute, The Magpie Salute (Eagle, 2017)[37]
• Albert Mangelsdorff, Albert Mangelsdorff and His Friends (MPS, 1971)[7]
• Kesang Marstrand, Our Myth (North Node, 2011)[38]
• John McLaughlin, Where Fortune Smiles (Dawn, 1971; Esoteric Recordings, 2017)[15]
• Charles Mingus, Epitaph (Columbia, 1989)[7]
• Ryan Montbleau, Patience On Friday (Blue's Mountain, 2007)[39]
• Musica Elettronica Viva, United Patchwork (Horo, 1978)[14]
• Robert Musso, Innermedium (DIW, 1999)[40]
• Pete Namlook, Polytime (Fax, 1998)[41]
• Rich Robinson, Through a Crooked Sun (Circle Sound 2011)[42]
• Roswell Rudd, Blown Bone (Emanem, 2006)[43]
• Frederic Rzewski, Attica/Coming Together/Les Moutons De Panurge (Opus One, 1974)[44]
• Alan Silva, Skillfullness (ESP Disk, 1969)[7][45]