Pedo-repair RNA motif
The Pedo-repair RNA motif is a conserved RNA structure identified by using bioinformatics.[1] It has been detected in only one species of bacteria: Pedobacter sp. BAL39, within the phylum Bacteroidota. The motif might be in the 5′ untranslated regions of operons containing genes predicted to be involved in DNA repair or related to restriction enzymes.
| Pedo-repair RNA | |
|---|---|
 Consensus secondary structure of Pedo-repair RNAs | |
| Identifiers | |
| Symbol | Pedo-repair |
| Rfam | RF01715 |
| Other data | |
| RNA type | Cis-regulatory element |
| Domain(s) | Pedobacter sp. BAL39 |
| PDB structures | PDBe |
References
- Weinberg Z, Wang JX, Bogue J, et al. (March 2010). "Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea and their metagenomes". Genome Biol. 11 (3): R31. doi:10.1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605.
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