YASARA
Yet Another Scientific Artificial Reality Application (YASARA) is a computer program for molecular visualising, modelling, and dynamics. It has many scientific uses, as expressed by the large number of scientific articles mentioning the software.[1] The free version of YASARA[2] is well suited to bioinformatics education. A series of freely available bioinformatics courses exist that use this software.
Students working on an educational task using YASARA.
| Original author(s) | Elmar Krieger Jacobus van Meel |
|---|---|
| Developer(s) | YASARA Biosciences WHAT IF Foundation Spronk NMR Consultancy |
| Initial release | November 1993 |
| Stable release | 21.8.26
/ 26 August 2021 |
| Written in | C, assembly, Python |
| Operating system | Windows, Linux, OS X |
| Platform | x86 |
| Available in | English |
| Type | Molecular modelling |
| License | Proprietary, free version for elementary structure work |
| Website | www |
See the Center for Molecular and Biomolecular Informatics (CMBI) education pages for a series of examples.[3]
- Krieger E, Koraimann G, Vriend G (May 2002). "Increasing the precision of comparative models with YASARA NOVA—a self-parameterizing force field". Proteins. 47 (3): 393–402. doi:10.1002/prot.10104. PMID 11948792.
- Modelling:
Krieger E, Vriend G (Feb 2002). "Models@Home: distributed computing in bioinformatics using a screensaver based approach". Bioinformatics. 18 (2): 315–8. doi:10.1093/bioinformatics/18.2.315. PMID 11847079. - Dynamics:
Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G (Dec 2004). "Making optimal use of empirical energy functions: force-field parameterization in crystal space". Proteins. 57 (4): 678–83. CiteSeerX 10.1.1.472.6529. doi:10.1002/prot.20251. PMID 15390263.
Learning to dock ligands with YASARA.
See also
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