Microbialite

Microbialites can have three different fabrics:[3]

• Stromatolitic: microbialite layered, laminated or agglutinated to form a stromatolite.
• Thrombolitic: microbialite with a clotted peloidal fabric if observed with a petrographic microscope. The density of peloids is variable. At the scale of the hand sample, the rock shows a dendritic fabric, and can be named thrombolite.
• Leiolitic: a microbialite with no layering nor clotted peloidal fabric. It is only made of a dense automicrite.

Microbialites played an important role in the evolution of the Earth's atmosphere, since they were ancestral niches where the first microbial metabolisms capable of releasing oxygen arose. Microbialites saturated coastal systems and later the primitive atmosphere with oxygen, changing it from a reduced state to an oxidized state.[5] The fossil microbialites (also called stromatolites) of the Precambrian and Phanerozoic are one of the first evidences of communal life. The oldest microbialites are dated at 3.5 billion years.[6] Fossil evidence suggests that microbialite-producing organisms were a very abundant life form from the early Archaean to the late Proterozoic, until their communities decreased due to the predation of foraminifera and other eukaryotic microorganisms.[7]

The formation of microbialites is complex and is a continuous process of precipitation and dissolution, where different microbial metabolisms are coupled and a high saturation index (SI) of ions in water is present.[8]

Microbialites have two possible genesis mechanisms:

1) Accretion / entrapment: when microorganisms actively trap organic matter, debris or mineral material through extracellular polymeric substances (EPS) .

2) Precipitation: it can be due to inorganic deposition, sedimentation or the passive influence of microbial metabolisms. There can also be precipitation due to saturation of the microenvironment when extracellular polymeric substances are rapidly degraded, causing ion saturation.

Living modern microbialites (less than 20,000 years old) are rare and can be found confined to places such as:

• Crater lakes: Blue Lake (Australia), Lake Satonda (Indonesia), Lake Dziani, Lake Alchichica (Mexico), Lake Vai Lahi and Lake Vai Sii (Tonga), Lake Salda (Turkey)
• Saline / hypersaline lakes / lagoons: Pyramid Lake and Great Salt Lake (United States), Lake Van (Turkey), Brava Lagoon and Tebinquicho Lagoon (Chile), Lake Van (Turkey)
• Alkaline lakes: Lake Thetis (Autralia), Lake Sarmiento (Chile), Lake Nuoertu and Lake Huhejaran (China), Mono Lake (United States), Lake Turkana (Kenya), Lake Petukhovskoe (Russia)
• Freshwater lakes / lagoons: Lagoa Salgada (Brazil), Laguna Negra, Catamarca (Argentina), Lagunas de Ruidera (Spain), Bacalar (Mexico), Lake Richmond (Australia), Pavilion Lake (Canada), Green Lake (United States) Alkaline pools: Four swamp blue pools (Mexico) Abandoned open mines: Clinton Creek (Canada), Rio Tinto (Spain)
• Marine / Estuary / Estuary Systems: Shark Bay, Australia, Highbourne Cay (Bahamas), Tikehau (French Polynesia), Cayo Coco (Cuba), Lake Clifton, Western Australia.

Microbialites are made up of layers made up of an organic component and another mineral.[9] The organic component is an elaborate microbial mat where different communities of microorganisms interact with different metabolisms and create a micro-niche where oxygenic and anoxygenic phototrophic organisms coexist, nitrogen fixers, sulfur reducers, methaneotrophs, methanogens, iron oxidizers, and an infinity of heterotrophic decomposers.[10] The mineral component is composed of carbonates, generally calcium carbonate or magnesium carbonates such as hydromagnesite, although there may also be sintered silicones, that is, silicates and include mineral forms of sulfur, iron (pyrite) or phosphorus.[11] Carbonate is usually a type of autogenic automicrite, therefore it precipitates in situ. Microbialites can be viewed as a type of biogenic sedimentary rock where the reef builders are microbes and carbonate precipitation is induced. Microorganisms can precipitate carbonate in both shallow and deep waters

A broad number of studies have analyzed the diversity of microorganisms living at the surface of microbialites.[12][13] Very often, this diversity is very high and includes bacteria, archaea and eukaryotes. While the phylogenetic diversity of these microbial communities is pretty well assessed using molecular biology, the identity of the organisms contributing to carbonate formation remains uncertain. Interestingly, some microorganisms seem to be present in microbialites forming in several different lakes, defining a core microbiome.[14][12] Microbes that precipitate carbonate to build microbialites are mostly prokaryotes, which include bacteria and archaea. The best known carbonate-producing bacteria are Cyanobacteria and Sulfate-reducing bacteria.[15] Additional bacteria may play a prominent role, such as bacteria performing anoxygenic photosythes[16] is. Archaea are often extremophiles and thus live in remote environments where other organisms cannot live, such as white smokers at the bottom of the oceans.

Eukaryotic microbes, instead, produce less carbonate than prokaryotes.[17]

There is great interest in studying fossil microbialites in the field of paleontology since they provide relevant data on paleoclimate and function as bioclimatic indicators.[18] There is also an interest in studying them in the field of astrobiology, as they are one of the first forms of life, one would expect to find evidence of these structures on other planets.[19] The study of modern microbialites can provide relevant information and serve as environmental indicators for the management and conservation of protected natural areas.[20] Due to their ability to form minerals and precipitate detrital material, biotechnological and bioremediation applications have been suggested in aquatic systems for carbon dioxide sequestration, since microbialites can function as carbon sinks.[21]