The taxon authority Aguirre may refer to:
- Ernesto Aguirre León (1951– ; E.Aguirre), Mexican botanist
- Ernesto F. Aguirre-Ruiz, Spanish entomologist
- Gabriel Aguirre-Fernández
- Helmuth Aguirre, Colombian entomologist
- Ignacio Aguirre-Olavarrieta (1955– ; Aguirre-Olav.), botanist
- José Luis Castro Aguirre (1943–2011), Mexican ichthyologist
- Julio Aguirre (Jul.Aguirre), Spanish phycologist and paleobotanist
- Luis Aguirre, Peruvian zoologist
- María Aguirre-Urreta, Argentinian paleontologist
- Maria Begoña Aguirre-Hudson or Maria Begoña Aguirre (M.B.Aguirre), lichenologist
- María Belén Aguirre, Argentinian entomologist
- Martha Angélica Gutiérrez-Aguirre, Mexican carcinologist
- M. Leopoldina Aguirre-Macedo, Mexican parasitologist
- Vanessa Aguirre-Peñafiel, Ecuadorian zoologist
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