Corneal transplants divide into two main types: penetrating (full-thickness) keratoplasty and partial thickness corneal transplants. The type of corneal transplant performed is primarily determined by the condition of the cornea in the receiving eye. In Descemet's-stripping automated endothelial keratoplasty (DSAEK), Descemet's membrane and the endothelium are replaced with a corneal graft including some stroma while the superficial layers of the recipient cornea are left intact. Some physicians roughen the peripheral stroma with a scraping device to aid adherence of the graft. Descemet's membrane endothelial keratoplasty (DMEK) is the least aggressive type of corneal transplant as only Descemet's membrane, and the endothelium is replaced with donor tissue that does not include a stromal component.

Phototherapeutic keratectomy uses an excimer laser to remove the diseased part of the superficial cornea. This procedure may involve scar removal, smoothing of the cornea, epithelial erosion treatment, and the changing of corneal shape.[6][7][8][9]

Some of the most common conditions affecting the cornea include allergies, keratitis, dry eye, and injury. The majority of allergies affecting the eye are related to pollen, dust, or pet dander exposure, and symptoms may include itchiness, redness, stinging or burning, tearing, and excess watery discharge. These symptoms are often relieved by the administration of eye drops containing an antihistamine such as azelastine hydrochloride, emedastine difumarate, or levocabastine or mast-cell stabilizer drops such as ketotifen fumarate, cromolyn, lodoxamide, nedocromil, or pemirolast potassium. Multi-action eyedrops are also available. Inflammation of the cornea is referred to as keratitis, and often results from a minor injury, improper use of contact lenses, and infection. Antibacterial or antifungal drops may be used to treat the etiologic agent or prevent worsening of symptoms, and steroid eye drops may be of benefit in reducing the inflammation. Dry eye results from a lack of quality tear production often described as a "scratchy" feeling as if there is a foreign object in the eye.  Injuries to the cornea vary widely in severity; minor scratches typically resolve spontaneously, whereas deep corneal abrasions can result in scarring, which may cause blurry vision, sensitivity to light, or pain.

Less commonly, corneal dystrophies may compromise corneal health. Corneal dystrophies involve opacification or modified shaping of one or more corneal layers. They affect both eyes, have a genetic component, and progress gradually. Keratoconus is a relatively common dystrophy estimated to affect approximately 1 in every 2000 people.  Keratoconus involves a thinning and cone-shaped bulging of the cornea, which disrupts the normal transmission and refraction of light. Keratoconus is most commonly diagnosed in teenagers and young adults. Corrective measures include the use of corrective lenses, and in some cases, the implantation of intra-corneal inserts called Intacs; in severe cases, corneal transplantation could be necessary to preserve vision.

Corneal cross-linking involves the administration of riboflavin to the surface of the eye, followed by treatment with ultraviolet light to eliminate ectasia of the cornea. The FDA first approved the use of corneal cross-linking systems in the treatment of keratoconus in April 2016. Lattice corneal dystrophy involves amyloid deposition in the corneal stroma and follows an autosomal dominant inheritance pattern. It divides into two primary types: in type 1, amyloid deposition is limited to the cornea, while type 2 exhibits systemic amyloid effects. As the condition progresses, patients experience recurrent corneal erosions and corneal opacification. Treatments aim to address these primary symptoms and may include the use of hypertonic saline eye drops, bandage contact lenses, artificial tears, laser surface ablation, and corneal transplantation. Fuchs dystrophy is a malady in which the corneal endothelial cells die. This condition impairs their ability to pump fluid out of the stroma, which results in fluid buildup in the cornea and consequent visual impairment. In the first stage of the disease, vision is hazy in the morning but improves as the day progresses, while in stage 2, vision becomes impaired throughout the day. Treatment typically aims to reduce the corneal swelling, which could involve the use of hypertonic saline eye drops or a hairdryer to dry the cornea. Severe cases may require corneal transplantation. Map-dot-fingerprint dystrophy or Cogan's dystrophy results from the abnormal development of the basement membrane of the corneal epithelium. It most commonly presents in patients between the ages of 40 and 70.  Patients exhibit grayish outlines in the cornea on slit-lamp examination. The instability of the basement membrane can cause chronic epithelial erosions, which may lead to blurred vision and/or painful episodes due to the exposure of nerve endings lining the epithelium. Most cases receive treatment with lubricating eyedrops; in some patients, anterior corneal stromal punctures, corneal scraping, and phototherapeutic keratectomy may be options.

Iridocorneal endothelial syndrome (ICE) causes glaucoma, visible changes in the iris, and swelling of the cornea due to the movement of corneal epithelial cells to the iris.  In ICE, treatment of the glaucoma is often requisite, and in cases of severe corneal compromise, transplantation may be necessary.  Pterygia are triangular, pinkish growths on the cornea that are more prevalent in sunny climates. Surgical removal is only a recommendation in cases where vision is impaired, and the recurrence rate is approximately 50%.  

Infectious agents that affect the cornea with relative frequency include varicella-zoster (shingles) virus and herpes simplex viruses. Herpes zoster ophthalmicus is a varicella-zoster reactivation (shingles) involving the V1 dermatome. Anti-viral treatments may be of benefit for herpes zoster ophthalmicus since herpes virus infections can cause corneal damage, impairing vision.[10][11][12][13][14][15]