Deinococcus aerius

Deinococcus aerius
Scientific classification
Domain: Bacteria
Phylum: Deinococcota
Class: Deinococci
Order: Deinococcales
Family: Deinococcaceae
Genus: Deinococcus
Species:
D. aerius
Binomial name
Deinococcus aerius
Yang et al., 2009

Deinococcus aerius is an anaerobic bacterium that can be found in the atmosphere above the island of Japan.[1][2][3] Living in such conditions makes these bacteria highly resistant to desiccation, UV-C, and gamma radiation.[3] Although previously unidentified as strain TR0125, this bacterium was determined to be Deinococcus aerius by 16S rRNA sequencing.[4]

Gram type, morphology

When grown on anaerobic enrichment agar, colonies of D. aerius were observed to be “circular, convex, shiny and orange”.[4] A gram stain revealed that these bacteria are gram-positive.[4] Scanning electron microscopy revealed that cells of this bacterium are circular in shape and approximately 1.0–1.5 micrometers in size.[4] Additionally, they were found to exist as “single cells, or in pairs, tetrads or clusters”.[4]

Metabolism

Several metabolism tests have shown that D. aerius is not involved in “nitrate reduction, urease, arginine hydrolase, and ornithine decarboxylase activities and was unable to use some carbon sources”.[3] However, subsequent studies have shown that these bacteria are able to grow using “arabinose, glucosamine, ornithine, glutamate, maltose, sucrose, proline, raffinose, cysteine, lysine and methionine” as carbon sources.[4]

Where it is found

Deinococcus. aerius has been previously isolated from the atmosphere above Japan at altitudes between 0.8 and 5.8 km. To do this, dust samples were collected “on membrane filters using an ASD1 air sampler”.[4] The samples were then incubated on anaerobic enrichment agar and strain TR0125 was identified as D. aerius.[4]

Media grown on

Deinococcus aerius has been cultured on mTGE agar which contains beef extract, tryptone, glucose and Difto Bacto agar.[4] A growth analysis revealed that this bacterium grows best at temperatures between 25-30 °Celsius and did not grow at 4, 10 or 47 °C.[4]

Ecology

Because so little is known about this organism, its interactions with members of its genus as well as other organisms is still unknown.

Diversity

Using 16S rRNA sequencing, D. aerius was able to be placed on a phylogenetic tree to determine its relationships to other organisms in the genus.[4] Analysis of the genome revealed that D. aerius had 92.3% genomic similarity to D. geothermalis and 95.7% genomic similarity to D. apachensi.[4]

Genome

Whole-genome sequencing was used to determine features of the D. aerius genome.[3] It was found that the genome had a total length of 4,524,446 base pairs.[3] Included in this, were 4,446 protein-coding sequences, 52 tRNA operons and 1 rRNA operon”.[3] It has been observed that D. aerius does not grow as well as other Deinococcus species, which may be due in part to its single rRNA operon.[3] Having only one rRNA operon would decrease the rate of protein synthesis in these bacteria, thus decreasing the rate for possible growth.[3]

References

  1. ↑ Yang, Yinjie; Itoh, Takashi; Yokobori, Shin-ichi; Itahashi, Shiho; Shimada, Haruo; Satoh, Katsuya; Ohba, Hirofumi; Narumi, Issay; Yamagishi, Akihiko (August 2009). "Deinococcus aerius sp. nov., isolated from the high atmosphere". International Journal of Systematic and Evolutionary Microbiology. 59 (8): 1862–1866. doi:10.1099/ijs.0.007963-0. PMID 19567578.
  2. ↑ "Deinococcus aerius". www.uniprot.org. UniProt. Retrieved 2019-05-02.
  3. 1 2 3 4 5 6 7 8 Satoh, Katsuya, et al. “Draft Genome Sequence of the Radioresistant Bacterium Deinococcus Aerius TR0125, Isolated from the High Atmosphere above Japan.” Genome Announcements, vol. 6, no. 9, 1 Feb. 2018, doi:10.1128/genomea.00080-18.
  4. 1 2 3 4 5 6 7 8 9 10 11 12 Yang, Y.; Itoh, T.; Yokobori, S.-i.; Itahashi, S.; Shimada, H.; Satoh, K.; Ohba, H.; Narumi, I.; Yamagishi, A. (30 June 2009). "Deinococcus aerius sp. nov., isolated from the high atmosphere". International Journal of Systematic and Evolutionary Microbiology. 59 (8): 1862–1866. doi:10.1099/ijs.0.007963-0. PMID 19567578.
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