ALMS1

Alstrom syndrome 1 also known as ALMS1 is a protein which in humans is encoded by the ALMS1 gene.[1][2]

Alstrom syndrome protein 1
Identifiers
AliasesALMS1IPR028781
External IDsGeneCards:
Orthologs
SpeciesHumanMouse
Entrez

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Ensembl

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UniProt

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RefSeq (mRNA)

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RefSeq (protein)

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Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human
Alstrom syndrome protein 1
Identifiers
SymbolALMS1
NCBI gene7840
HGNC428
OMIM606844
RefSeqNM_015120
UniProtQ8TCU4
Other data
LocusChr. 2 p13.1
Search for
StructuresSwiss-model
DomainsInterPro

Molecular biology

The gene is located on the short arm of chromosome 2 (2p13.2) on the plus (Watson) strand. It is 224,161 bases in length organised into 23 exons. The encoded protein has 4,167 amino acids and molecular weight of 460,937 Da. Three isoforms are known. The protein itself has a large tandem-repeat domain comprising 34 imperfect repetitions of 47 amino acids. Mutations associated with disease are usually found in exons 8, 10 and 16.

The gene is expressed in fetal tissues including the aorta, brain, eye, kidney, liver, lung, olfactory bulb, pancreas, skeletal muscle, spleen and testis. The protein is found in the cytoplasm, centrosome, cell projections and cilium basal body. During mitosis it localizes to both spindle poles.

Function

Knockdown of Alms1 by short interfering RNA in mouse inner medullary collecting duct cells caused defective ciliogenesis. Cilia were stunted and treated cells lacked the ability to increase calcium influx in response to mechanical stimuli.[3]

Disease association

Mutations in the ALMS1 gene have been found to be causative for Alström syndrome with a total of 81 disease-causing mutations.[4]

Multiple mutations are known: the current (2007) total is 79. These include both nonsense and frameshift mutations. Most of the mutations have been found in exons 8,10 and 16.

Discovery

The Jackson Laboratory in Bar Harbor, Maine, USA with the University of Southampton, UK identified ALMS1 as the single gene responsible for Alström syndrome.[1][5]

See also

References
  1. Collin GB, Marshall JD, Cardon LR, Nishina PM (February 1997). "Homozygosity mapping of Alström syndrome to chromosome 2p". Hum. Mol. Genet. 6 (2): 213–219. doi:10.1093/hmg/6.2.213. PMID 9063741.
  2. Nagase T, Ishikawa K, Nakajima D, Ohira M, Seki N, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (April 1997). "Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro". DNA Res. 4 (2): 141–150. doi:10.1093/dnares/4.2.141. PMID 9205841.
  3. Li G, Vega R, Nelms K, Gekakis N, Goodnow C, McNamara P, Wu H, Hong NA, Glynne R (January 2007). "A role for Alström syndrome protein, alms1, in kidney ciliogenesis and cellular quiescence". PLOS Genet. 3 (1): e8. doi:10.1371/journal.pgen.0030008. PMC 1761047. PMID 17206865.
  4. Joy T, Cao H, Black G, Malik R, Charlton-Menys V, Hegele RA, Durrington PN (2007). "Alstrom syndrome (OMIM 203800): a case report and literature review". Orphanet Journal of Rare Diseases. 2 (1): 49. doi:10.1186/1750-1172-2-49. PMC 2266715. PMID 18154657.
  5. Hearn T, Renforth GL, Spalluto G, Hanley NA, Piper K, Brickwood S, White C, Connolly V, Taylor JF, Russell-Eggitt I, Bonneau D, Walker M, Wilson DI (2002). "Mutation of ALMS1, a large gene with a tandem repeat encoding 47 amino acids, causes Alström syndrome". Nature Genetics. 31 (1): 79–83. doi:10.1038/ng874. PMID 11941370.


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