Phage P22 tailspike protein

The tailspike protein (P22TSP) of Enterobacteria phage P22 mediates the recognition and adhesion between the bacteriophage and the surface of Salmonella enterica cells. It is anchored within the viral coat and recognizes the O-antigen portion of the lipopolysaccharide (LPS) on the outer-membrane of Gram-negative bacteria. It possesses endoglycanase activity, serving to shorten the length of the O-antigen during infection.[2]

Bifunctional tail protein
PDB rendering based on 2XC1​.[1]
Identifiers
OrganismEnterobacteria phage P22
Symbol9
Entrez1262799
PDB2XC1
RefSeq (mRNA)NC_002371.2
RefSeq (Prot)NP_059644.1
Other data
EC number3.2.1.-
ChromosomeGenome: 0.02 - 0.02 Mb

History

The initial interest in tailspike proteins was in the study of the effect the mutations on protein folding.[3] Some mutations affect the folding efficiency of the protein but have no effect on the final native structure. Other mutations have been identified that lead to a temperature sensitive phenotype.[4] Reconstitution experiments have demonstrated that the in vitro folding process closely mirrors the in vivo folding pathway.[3] It has been further been demonstrated that folding yields in vitro decrease strongly with increasing temperature.[5]

Function

O-antigen binding

P22TSP recognizes the O-antigen polysaccharide of LPS serotypes A, B, or D1. The serotypes correspond to species S. Typhimurium, S. Enteritidis, and S. Paratyphi A.[6] These carbohydrates share the same main chain trisaccharide repeating unit alpha-D-mannose-(1—4)-alpha-L-rhamnose-(1—3)-alpha-D-galactose-(1—2), but each have a different 2,6-dideoxyhexose substituent at C-3 of the mannose.[7]

In vivo, P22TSP binds as a homotrimer and one phage particle can carry up to 6 tailspikes. P22TSP can bind multivalently, leading to an essentially irreversible attachment.[7] It was shown that a minimum of two repeating units or an octasaccharide is required for binding.[2] The TSP is also capable of binding longer fragments with similar affinity.

Endoglycosidase activity

P22TSP has endorhamnosidase activity and cleaves the glycosidic bond of the rhamnose group, producing an octasaccharide product. Two aspartic acids and one glutamic acid in the active site have been strongly linked to enzymatic activity.[2] Different biological functions for this cleavage have been proposed. Cleavage could facilitate access to the membrane.[8] or allow the phage to find the optimal position for infection.[9]

Role in DNA injection

It has been demonstrated that cleavage of the O-antigen is necessary for DNA ejection by the phage. It has been proposed that P22TSP binding positions the phage to inject its DNA.[10]

Structure

P22TSP is a homotrimeric structural protein consisting of 666 amino acids. It is noncovalently bound to the neck of the viral capsid. It has been crystallized in space group P213 and has one monomer in the asymmetric unit. The secondary structure of P22TSP is dominated by a parallel Beta helix comprising 13 complete turns.[11] This structure is further characterized as a beta-solenoid domain.

P22TSP is compOsed of two domains, each with distinct function. An N-terminal domains serves to bind to the phage particle and a C-terminal domains that interacts with the Salmonella surface. These two domains are connected by a flexible linker.[2]

The binding site of P22TSP is located in the central part of the Beta helix. A deep cleft is formed by a 60-residue insertion on one side along with three smaller 5-25 residue insertions on the other.[12]

Homologous proteins

Several functional homologues of P22TSP has been identified belonging to the bacteriophages HK620 and Sf6. Both of these tailspike proteins also contain right-handed parallel beta-helices and share similar O-antigen binding and cleavage to P22TSP. These proteins share 70% sequence identity in their N-terminal domains, but no sequence similarities have been found in the C-terminal domains.[13]

Translational applications

Carbohydrate binding scaffolds

P22TSP has also been studied due to its high kinetic stability. As it exists and functions in the extracellular environment, it must endure harsh conditions such as highly variable temperatures or high concentrations of protein degrading enzymes.[14] The kinetic stability of P22TSP derives from its compact beta-solenoid architecture. It was shown that like other viral fibrous proteins, P22 tailspike protein possesses a high stability against denaturation. This makes P22TSP a promising candidate for use as thermostable scaffold capable of being tailor-made to recognize heteropolymers.[14]

Therapy against Salmonella infection

Tailspike proteins have also shown potential for more translational applications such as fighting bacterial infections. A study has demonstrated that orally administered P22TSP markedly reduced Salmonella colonization in a group of chickens. They suggest that the endorhamnosidase activity of the free tailspike molecule serves to modify O-antigen, compromising the LPS structure and thereby preventing the binding of a phage P22-attached tailspike protein. The authors suggest that this has the potential to be a novel therapy meant to fight bacterial infections.[15]

References
  1. 2XC1​, 2VFM​, 2VKY​, 2VFP​, 2VFQ​, 2VFO​, 2VFN​, 2VNL​, 3TH0​, 1TYU​, 1TYV​, 1TYX​, 1TYW​, 1TSP​, 1CLW​, 1QRB​, 1QRC​, 1QQ1​, 1QA1​, 1QA2​, 1QA3​, 1LKT​
  2. Andres D, Baxa U, Hanke C, Seckler R, Barbirz S (Oct 2010). "Carbohydrate binding of Salmonella phage P22 tailspike protein and its role during host cell infection". Biochemical Society Transactions. 38 (5): 1386–1389. doi:10.1042/BST0381386. PMID 20863318.
  3. Danner M, Seckler R (Nov 1993). "Mechanism of phage P22 tailspike protein folding mutations". Protein Science. 2 (11): 1869–1881. doi:10.1002/pro.5560021109. PMC 2142274. PMID 8268798.
  4. Mitraki A, King J (Jul 1992). "Amino acid substitutions influencing intracellular protein folding pathways". FEBS Letters. 307 (1): 20–25. doi:10.1016/0014-5793(92)80894-M. PMID 1639189. S2CID 20899674.
  5. Danner M, Fuchs A, Miller S, Seckler R (Aug 1993). "Folding and assembly of phage P22 tailspike endorhamnosidase lacking the N-terminal, head-binding domain". European Journal of Biochemistry. 215 (3): 653–661. doi:10.1111/j.1432-1033.1993.tb18076.x. PMID 8354271.
  6. Andres D, Gohlke U, Broeker NK, Schulze S, Rabsch W, Heinemann U, Barbirz S, Seckler R (Apr 2013). "An essential serotype recognition pocket on phage P22 tailspike protein forces Salmonella enterica serovar Paratyphi A O-antigen fragments to bind as nonsolution conformers". Glycobiology. 23 (4): 486–494. doi:10.1093/glycob/cws224. PMID 23292517.
  7. Baxa U, Cooper A, Weintraub A, Pfeil W, Seckler R (May 2001). "Enthalpic barriers to the hydrophobic binding of oligosaccharides to phage P22 tailspike protein". Biochemistry. 40 (17): 5144–5150. doi:10.1021/bi0020426. PMID 11318636.
  8. Lindberg AA (1977). "Bacterial surface carbohydrates and bacteriophage adsorption". Surface Carbohydrates of the Procaryotic Cell: 289–356.
  9. Bayer ME, Takeda K, Uetake H (Sep 1980). "Effects of receptor destruction by Salmonella bacteriophages epsilon 15 and c341". Virology. 105 (2): 328–337. doi:10.1016/0042-6822(80)90034-3. PMID 7423851.
  10. Andres D, Hanke C, Baxa U, Seul A, Barbirz S, Seckler R (Nov 2010). "Tailspike interactions with lipopolysaccharide effect DNA ejection from phage P22 particles in vitro". The Journal of Biological Chemistry. 285 (47): 36768–36775. doi:10.1074/jbc.M110.169003. PMC 2978605. PMID 20817910.
  11. Steinbacher S, Seckler R, Miller S, Steipe B, Huber R, Reinemer P (Jul 1994). "Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer". Science. 265 (5170): 383–386. Bibcode:1994Sci...265..383S. doi:10.1126/science.8023158. PMID 8023158.
  12. Steinbacher S, Baxa U, Miller S, Weintraub A, Seckler R, Huber R (Oct 1996). "Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors". Proceedings of the National Academy of Sciences of the United States of America. 93 (20): 10584–10588. Bibcode:1996PNAS...9310584S. doi:10.1073/pnas.93.20.10584. PMC 38196. PMID 8855221.
  13. Barbirz S, Müller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R (Jul 2008). "Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related". Molecular Microbiology. 69 (2): 303–316. doi:10.1111/j.1365-2958.2008.06311.x. PMID 18547389. S2CID 34854199.
  14. Barbirz S, Becker M, Freiberg A, Seckler R (Feb 2009). "Phage tailspike proteins with beta-solenoid fold as thermostable carbohydrate binding materials". Macromolecular Bioscience. 9 (2): 169–173. doi:10.1002/mabi.200800278. PMID 19148901.
  15. Waseh S, Hanifi-Moghaddam P, Coleman R, Masotti M, Ryan S, Foss M, MacKenzie R, Henry M, Szymanski CM, Tanha J (2010). "Orally administered P22 phage tailspike protein reduces salmonella colonization in chickens: prospects of a novel therapy against bacterial infections". PLOS ONE. 5 (11): e13904. Bibcode:2010PLoSO...513904W. doi:10.1371/journal.pone.0013904. PMC 2989905. PMID 21124920.
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