StarBase (biological database)

StarBase[2] is a database for decoding miRNA-mRNA, miRNA-lncRNA,[3] miRNA-sncRNA, miRNA-circRNA,[3] miRNA-pseudogene, protein-lncRNA,[4] protein-ncRNA, protein-mRNA interactions, and ceRNA networks[5] from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data.[1][6] StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA[7] regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from The Cancer Genome Atlas (TCGA) Data Portal.

This article is about the biological database. For the office database software, see StarOffice.
StarBase
Content
DescriptionmicroRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Contact
Research centerSun Yat-sen University
LaboratoryKey Laboratory of Gene Engineering of the Ministry of Education
AuthorsJian-Hua Yang
Primary citationYang & al. (2011)[1]
Release date2010
Access
Websitehttp://starbase.sysu.edu.cn/

See also

References
  1. Yang, Jian-Hua; Li Jun-Hao; Shao Peng; Zhou Hui; Chen Yue-Qin; Qu Liang-Hu (Jan 2011). "starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data". Nucleic Acids Res. England. 39 (Database issue): D202-9. doi:10.1093/nar/gkq1056. PMC 3013664. PMID 21037263.
  2. http://starbase.sysu.edu.cn/
  3. "LncRNABase miRNA-lncRNA interactions: decoding miRNA-lncRNA interaction maps". starbase.sysu.edu.cn. Archived from the original on 2013-09-22.
  4. "RBP-LncRNA interactions, starBase: decoding RNA-LncRNA interaction maps". starbase.sysu.edu.cn. Archived from the original on 2013-09-22.
  5. "CeRNABase starBase: Decoding ceRNA regulatory networks from CLIP-Seq (PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data. Competing endogenous RNAs (CeRNAs)". Archived from the original on 2013-09-22. Retrieved 2013-12-08.
  6. Li, JH; Liu, S; Zhou, H; Qu, LH; Yang, JH (Dec 1, 2013). "starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data". Nucleic Acids Research. 42 (1): D92-7. doi:10.1093/nar/gkt1248. PMC 3964941. PMID 24297251.
  7. "Pan-Cancer ceRNA Regulatory Network. StarBase: Decoding miRNA-target, miRNA-ceRNA and protein-RNA interaction maps from CLIP-Seq(PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data". starbase.sysu.edu.cn. Archived from the original on 15 March 2014. Retrieved 13 January 2022.


This article is issued from Wikipedia. The text is licensed under Creative Commons - Attribution - Sharealike. Additional terms may apply for the media files.