Sporolides

Sporolides A and B are polycyclic macrolides extracted from the obligate marine bacterium Salinispora tropica, which is found in ocean sediment. They are composed of a chlorinated cyclopenta[a]indene ring and a cyclohexenone moiety.[1] They were the second group of compounds (after salinosporamide A) isolated from Salinispora, and were said to indicate the potential of marine actinomycetes as a source of novel secondary metabolites.[2] The structures and absolute stereochemistries of both metabolites were elucidated using a combination of NMR spectroscopy and X-ray crystallography.

Sporolides
Names
IUPAC name
(3S,7S,8R,12R,17R,19R,21R,25R)-23-chloro-3,12,17,19,21-pentahydroxy-8-methoxy-5-methyl-2,10,24,26-tetraoxaheptacyclo[11.8.2.27,7.14,18.01,18.016,22.03,25]hexacosa-4,13(23),14,16(22)-tetraene-6,9-dione
Identifiers
3D model (JSmol)
PubChem CID
InChI
  • A: InChI=1S/C24H23ClO12/c1-7-15(29)21-18(33-2)19(31)34-6-10(26)8-3-4-9-13(14(8)25)22-11(27)5-12(28)23(22,16(9)30)35-17(7)24(32,37-22)20(21)36-21/h3-4,10-12,16,18,20,26-28,30,32H,5-6H2,1-2H3/t10-,11+,12+,16+,18-,20+,21+,22?,23?,24+/m0/s1
    Key: KFIMJAYNUYNRLK-PKIZEOIBSA-N
  • B: InChI=1S/C24H23ClO12/c1-7-15(29)21-18(33-2)19(31)34-6-11(26)8-3-9-14(10(25)4-8)16(30)23-13(28)5-12(27)22(9,23)37-24(32,17(7)35-23)20(21)36-21/h3-4,11-13,16,18,20,26-28,30,32H,5-6H2,1-2H3/t11-,12+,13+,16+,18-,20+,21-,22-,23-,24+/m0/s1
    Key: CYXHIOKLZVVCBQ-LCCPHMJJSA-N
SMILES
  • A: CC1=C2[C@@]3([C@H]4[C@](C1=O)(O4)[C@H](C(=O)OC[C@@H](C5=C(C6=C(C=C5)[C@H](C7(C6(O3)[C@@H](C[C@H]7O)O)O2)O)Cl)O)OC)O
  • B: CC1=C2C3(C4C(C1=O)(O4)C(C(=O)OCC(C5=CC6=C(C(C7(C6(O3)C(CC7O)O)O2)O)C(=C5)Cl)O)OC)O
Properties
Chemical formula
 C24H23ClO12
Molar mass 538.89 g·mol−1
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
Infobox references

The complex aromatic structure of the sporolides was hypothesized to be derived from an unstable nine-membered ring enediyne precursor, which could undergo Bergman cyclization to generate a para-benzyne intermediate. Nucleophilic attack by chloride would account for the 1:1 mixture of sporolide A and B and for the single chlorine in these enediyne-derived natural products. This proposed mechanism was demonstrated in laboratory experiments,[3]

Biosynthesis

The biosynthesis of sporolide A and B is related to that of enediynes such as dynemicin A[4] and is proposed to proceed as shown below.[1][3]

Chemical synthesis

The first total synthesis of sporolide B was reported by K. C. Nicolaou's group and used a highly stereoselective and convergent strategy that involved two cycloaddition reactions. The first was a ruthenium-catalyzed intermolecular [2+2+2] cycloaddition reaction between two acetylenic units, A and B, and the second a thermally induced intramolecular [4+2] cycloaddition reaction between an o-quinone and the tetrasubstituted olefin within the intermediate, forming the macrocyclic structure of the target product.[5][6]

References
  1. McGlinchey, Ryan P.; Nett, Markus; Moore, Bradley S. (2008). "Unraveling the Biosynthesis of the Sporolide Cyclohexenone Building Block". Journal of the American Chemical Society. 130 (8): 2406–2407. doi:10.1021/ja710488m. PMID 18232689.
  2. Buchanan, Greg O.; Williams, Philip G.; Feling, Robert H.; Kauffman, Christopher A.; Jensen, Paul R.; Fenical, William (2005). "Sporolides a and b: Structurally Unprecedented Halogenated Macrolides from the Marine Actinomycete Salinisporatropica". Organic Letters. 7 (13): 2731–2734. doi:10.1021/ol050901i. PMID 15957933.
  3. Perrin, Charles L.; Rodgers, Betsy L.; O'Connor, Joseph M. (2007). "Nucleophilic Addition to a p-Benzyne Derived from an Enediyne: A New Mechanism for Halide Incorporation into Biomolecules". Journal of the American Chemical Society. 129 (15): 4795–4799. doi:10.1021/ja070023e. PMID 17378569.
  4. Rudolf, Jeffrey D.; Yan, Xiaohui; Shen, Ben (2016). "Genome neighborhood network reveals insights into enediyne biosynthesis and facilitates prediction and prioritization for discovery". Journal of Industrial Microbiology & Biotechnology. 43 (2–3): 261–276. doi:10.1007/s10295-015-1671-0. PMC 4753101. PMID 26318027.
  5. Nicolaou, K. C.; Tang, Yefeng; Wang, Jianhua (2009). "Total Synthesis of Sporolide B". Angewandte Chemie International Edition. 48 (19): 3449–3453. doi:10.1002/anie.200900264. PMC 2674522. PMID 19241430.
  6. Nicolaou, K. C.; Wang, Jianhua; Tang, Yefeng; Botta, Lorenzo (2010). "Total Synthesis of Sporolide B and 9-epi-Sporolide B". Journal of the American Chemical Society. 132 (32): 11350–11363. doi:10.1021/ja1048994. PMC 2932487. PMID 20698702.
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