1980

• Doadrio, Ignacio. 1980 Descripción de un nuevo género y de una nueva especie Iberocypris palaciosi n. gen. n. sp. (Pisces, Cyprinidae). Doñana Acta Vert. 7(1): 5-17.

1988

• Doadrio, Ignacio. 1988 Leuciscus carolitertii n. sp. from the Iberian Peninsula (Pisces; Cyprinidae). Senckenbergiana biologica 68(4/6): 301-309.

1990

• Doadrio, I. 1990. Phylogenetic relationships and classification of western palearctic species of the genus Barbus (Osteichthyes, Cyprinidae). Aquatic Living Resources 3(4): 265–282. DOI: 10.1051/alr:1990028 . Reference page. 

1997

• Doadrio, Ignacio & A. Perdices. 1997 Taxonomic study of the Iberian Cobitis (Osteichthyes, Cobitidae), with description of a new species. Zoological journal of the Linnean Society 119(1): 51-67.

1999

• Doadrio, Ignacio, J. A. Carmona, E. Martinez & A. De Sostoa. 1999 Genetic variation and taxonomic analysis of the subgenus Profundulus. Journal of Fish Biology 55(4): 751-766.

2000

• Perdices, A., Ignacio Doadrio, I. M. Côté, A. Machordom, P. Economidis & John D. Reynolds. 2000 Genetic divergence and origin of Mediterranean populations of the river blenny Salaria fluviatilis (Teleostei: Blenniidae). Copeia 2000(3): 723-731.

2001

• Schönhuth, S., A. De Sostoa, E. Martinez & Ignacio Doadrio. 2001 Southern Mexican minnows of the genus Notropis (Actinopterygii, Cyprinidae): genetic variation, phylogenetic relationships and biogeographical implications. Biochemical Systematics and Ecology 29(4): 359-377.

2002

• Doadrio, I., Carmona, J.A. & Fernández-Delgado, C. 2002. Morphometric study of the Iberian Aphanius (Actinopterygii, Cyprinodontiformes), with description of a new species. Folia Zoologica 51(1): 67–79. ResearchGate Reference page. 
• Perdices, A., E. Bermigham, A. Montilla & Ignacio Doadrio. 2002 Evolutionary history of the genus Rhamdia (Teleostei: Pimelodidae) in Central America. Molecular Phylogenetics & Evolution 25: 172-189.

2003

• Doadrio, Ignacio & J. A. Carmona. 2003 A new species of the genus Chondrostoma Agassiz, 1832 (Actinopterygii, Cyprinidae) from the Iberian Peninsula. Graellsia 59(1): 29-36.
• Schönhuth, S. & Ignacio Doadrio. 2003 Phylogenetic relationships of Mexican minnows of the genus Notropis (Actinopterygii, Cyprinidae). Biological Journal of the Linnean Society 80: 323-337.

2004

• Doadrio, Ignacio & M. J. Madeira. 2004 A new species of the genus Gobio Cuvier, 1816 (Actynopterygii [sic], Cyprinidae) from the Iberian Peninsula and southwestern France. Graellsia 60(1): 107-116.

2005

• Delling, B. & Ignacio Doadrio. 2005 Systematics of the trouts endemic to Moroccan lakes, with description of a new species. Ichthyological Exploration of Freshwaters 16(1): 49-64.
• Doadrio, Ignacio & A. Perdices. 2005 Phylogenetic relationships among the Ibero-African cobitids (Cobitis, Cobitidae) based on cytochrome b sequence data. Molecular Phylogenetics & Evolution 37: 484-493.
• Perdices, A., Ignacio Doadrio & E. Bermingham. 2005 Evolutionary history of synbranchid eels (Teleostei: Synbranchidae) in Central America and the Caribbean islands inferred from their molecular phylogeny. Molecular Phylogenetics & Evolution 37: 460-473.
• Robalo, J. I., V. C. Almada, C. Sousa Santos, M. I. Moreira & Ignacio Doadrio. 2005 New sspecies of the genus Chondrostoma Agassiz, 1832 (Actynopterigii [sic], Cyprinidae) from western Portugal. Graellsia 61(1): 19-29.
• Robalo, J. I., Ignacio Doadrio, V. C. Almada & Maurice Kottelat. 2005 Chondrostoma oligolepis, new replacement name for Leuciscus macrolepidotus Steindachner, 1866 (Teleostei: Cyprinidae). Ichthyological Exploration of Freshwaters 16(1): 47-48.

2006

• Blanco, José L., Tomas Hrbek & Ignacio Doadrio. 2006 A new species of the genus Aphanius (Nardo, 1832) (Actinopterygii, Cyprinodontidae) from Algeria. Zootaxa 1158: 39-53.
• Doadrio, I. & Carmona, J.A. 2006. Phylogenetic overview of the genus Squalius (Actinopterygii, Cyprinidae) in the Iberian Peninsula, with description of two new species. Cybium, 30(3): 199–214. Reference page. 

2007

• Robalo, J.I., Almada, V.C., Levy, A. & Doadrio, I. 2007. Re-examination and phylogeny of the genus Chondrostoma based on mitochondrial and nuclear data and the definition of 5 new genera. Molecular Phylogenetics and Evolution 42(2): 362–372. DOI: 10.1016/j.ympev.2006.07.003 Reference page. 

2012

• Levin, B.A., Freyhof, J., Lajbner, Z., Perea, S., Abdoli, A., Gaffaroğlu, M., Özuluğ, M., Rubenyan, H.R., Salnikov, V.B. & Doadrio, I. 2012. Phylogenetic relationships of the algae scraping cyprinid genus Capoeta (Teleostei: Cyprinidae). Molecular Phylogenetics and Evolution 62: 542–549.DOI: 10.1016/j.ympev.2011.09.004Reference page. 

2014

• de la Maza-Benignos, Mauricio., Ornelas-García, Claudia P., Lozano-Vilano, M. L., García-Ramírez, María E. & Doadrio, I. (2014). Phylogeographic analysis of genus Herichthys (Perciformes: Cichlidae), with descriptions of Nosferatu New Genus and H. tepehua n. sp. Hydrobiologia 748: 201–231.

2015

• Casal-Lopez, M., Perea, S., Yahyaoui, A. & Doadrio, I. 2015. Taxonomic review of the genus Luciobarbus Heckel, 1843 (Actinopterygii, Cyprinidae) from Northwestern Morocco with the description of three new species. Graellsia 71(2): e027. DOI: 10.3989/graellsia.2015.v71.135 Reference page. 
• Doadrio, I., Perea, S. & Yahyaoui, A., 2015: Two new species of Atlantic trout (Actinopterygii, Salmonidae) from Morocco. Graellsia, 71 (2): e031. DOI: 10.3989/graellsia.2015.v71.142

• Mousavi-Sabet, H., Vatandoust, S. & Doadrio, I. 2015. Review of the genus Alburnoides Jeitteles, 1861 (Actinopterygii, Cyprinidae) from Iran with description of three new species from the Caspian Sea and Kavir basins. Caspian Journal of Environmental Sciences 13(4): 293–331.PDF Reference page. 
• Ornelas-García, C. P., Martínez-Ramírez, E. & Doadrio, I. 2015. A new species of killifish of the family Profundulidae from the highlands of the Mixteca region, Mexico. Revista Mexicana de Biodiversidad 86(4): 926–933. Prepublication Reference page. 
• Pedraza-Lara, C. & Doadrio, I. 2015: A new species of dwarf crayfish (Decapoda: Cambaridae) from central México, as supported by morphological and genetic evidence. Zootaxa 3963(4): 583–594. DOI: 10.11646/zootaxa.3963.4.5. Preview (PDF) Reference page. 

2016

• Doadrio, Ignacio, Miriam Casal-Lopez & Silvia Perea. 2016 Taxonomic remarks on Barbus moulouyensis Pellegrin, 1924 (Actinopterygii, Cyprinidae) with the description of a new species of Luciobarbus Heckel, 1843 from Morocco. Graellsia 72(2): e054 [24 pp.].
• Doadrio, I., Casal-López, M., Perea, S. & Yahyaoui, A. 2016. Taxonomy of rheophilic Luciobarbus Heckel, 1842 (Actinopterygii, Cyprinidae) from Morocco with the description of two new species. Graellsia, 72(1): e039.DOI: 10.3989/graellsia.2016.v72.153Reference page. 
• Galván-Quesada, S., Doadrio, I., Alda, F., Perdices, A., Reina, R.G., García Varela, M., Hernández, N., Mendoza, A.C., Bermingham, E. & Domínguez-Domínguez, O. 2016. Molecular Phylogeny and Biogeography of the Amphidromous Fish Genus Dormitator Gill 1861 (Teleostei: Eleotridae). PLoS ONE, 11(4): e0153538. DOI: 10.1371/journal.pone.0153538 Reference page. 
• Jouladeh-Roudbar, Arash, Soheil Eagderi, Hamid R. Ghanavi & Ignacio Doadrio. 2016 Taxonomic review of the genus Capoeta Valenciennes, 1842 (Actinopterygii, Cyprinidae) from central Iran with the description of a new species. FishTaxa 1(3): 166-175.
• Perea, S., Cobo-Simon, M. & Doadrio, I. 2016. Cenozoic tectonic and climatic events in southern Iberian Peninsula: implications for the evolutionary history of freshwater fish of the genus Squalius (Actinopterygii, Cyprinidae). Molecular Phylogenetics and Evolution 97: 155–169. DOI: 10.1016/j.ympev.2016.01.007 Reference page. 
• Pérez-Rodríguez, R., Domínguez-Domínguez, O., Mar-Silva, A.F., Doadrio, I. & Pérez-Ponce de León, G. 2016. The historical biogeography of the southern group of the sucker genus Moxostoma (Teleostei: Catostomidae) and the colonization of central Mexico. Zoological Journal of the Linnean Society, Article first published online: 21 JAN 2016.DOI: 10.1111/zoj.12383 Reference page. 

2017

• Jouladeh-Roudbar, A., Eagderi, S., Ghanavi, H.R. & Doadrio, I. 2017. A new species of the genus Capoeta Valenciennes, 1842 from the Caspian Sea basin in Iran (Teleostei, Cyprinidae). ZooKeys 682: 137–155. DOI: 10.3897/zookeys.682.12670 Reference page. 

2019

• Mousavi-Sabet, Hamed, Maryam Saemi-Komsari, Ignacio Doadrio & Jörg Freyhof. 2019 Garra roseae, a new species from the Makran region in southern Iran (Teleostei: Cyprinidae). Zootaxa 4671(2): 223–239.

2020

• Saemi-Komsari, Maryam, Hamed Mousavi-Sabet, Masoud Sattari, Soheil Eagderi, Saber Vatandoust & Ignacio Doadrio. 2020 Descriptive osteology of Garra rossica (Nikolskii, 1900). FishTaxa 16: 19-28.