1997

• Naglis, S. 1997. Alpine Arten der Familie Dolichopodidae (Diptera) aus den Schweizer Alpen [Alpine species of the family Dolichopodidae (Diptera) from the Swiss Alps]. Studia dipterologica 4(1): 137–142.

1998

• Naglis, S. 1998. Dolichopodidae (Diptera) aus der Südschweiz [Dolichopodidae (Diptera) from southern Switzerland]. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 71(1-2): 169–176.

1999

• Naglis, S. 1999. Dolichopodidae (Diptera) neu für die Schweiz mit Ergänzungen zur Diptera Checklist [Dolichopodidae (Diptera) new for Switzerland with supplements to the Diptera Checklist]. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 72(1-2): 31–38.
• Naglis, S. 1999. A new species of Trigonocera Becker (Diptera: Dolichopodidae) from Tropical Africa. Studia dipterologica 6(2): 333–335.

2000

• Naglis, S. 2000. Six new species of Systenus (Diptera: Dolichopodidae) from Brazil, with a key to the Neotropical species. Studia dipterologica 7(1): 59–68.
• Naglis, S. 2000. Two new species of Mesorhaga (Diptera: Dolichopodidae) from Brazil, with a key to the Neotropical species. Bulletin de l'Institut Royal des Sciences Naturelles de Belgique 70: 251–254. PDF.

2001

• Naglis, S. 2001. Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) I: Coeloglutus Aldrich, Neotonnoiria Robinson, and Paracoeloglutus gen. nov., with the definition of the tribe Coeloglutini stat. nov. Studia dipterologica 8(1): 189–206. PDF.

2002

• Naglis, S. 2002. Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) II: Argentinia Parent, Dactylomyia Aldrich, Macrodactylomyia gen. nov., and Systenoides gen. nov., with the definition of a new tribe Dactylomyiini. Studia dipterologica 8(2): 475–504. PDF.
• Naglis, S. 2002. Preliminary results of a revision of the Neotropical Neurigoninae (Dolichopodidae). Fifth International Congress of Dipterology, Abstracts Volume 168-169.
• Naglis, S. 2002. Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) III: Bickelomyia gen. nov., with the definition of a new tribe Neurigonini. Studia dipterologica 9(1): 225–241. PDF.

2003

• Artmann-Graf, G., Chvala, M. & Naglis, S. 2003. Sechs für die Schweiz neue Dipterenarten (Tabanidae, Empididae, Dolichopodidae) und Bemerkungen zur Nomenklatur einer Schwebefliegenart (Syrphidae). Mitteilungen der Entomologischen Gesellschaft Basel 53: 74–78.
• Naglis, S. 2003. Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) IV: Viridigona gen. nov. Studia dipterologica 9(2): 561–604. PDF.
• Naglis, S. 2003. Revision of the Neotropical Neurigoninae (Diptera: Dolichopodidae) V: Neurigona Rondani. Studia dipterologica 10(1): 267–314. PDF.

2009

• Naglis, S. 2009. Neue Funde von Langbeinfliegen (Diptera, Dolichopodidae) für die Schweizer Fauna. [New records of long-legged Flies (Diptera, Dolichopodidae) for the Swiss Fauna]. Entomo Helvetica, Volume 2.
• Naglis, S. 2009. Checkliste der Langbeinfliegen (Diptera, Dolichopodidae) der Schweiz. [Checklist oft the long-legged Flies (Diptera, Dolichopodidae) of Switzerland]. Entomo Helvetica, Volume 2.

• Naglis, S. 2009. New records of Sympycninae (Diptera, Dolichopodidae) from Turkey, with the description of a new species of Teuchophorus. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 82(3–4): 173–180. DOI: 10.5169/seals-402986 .
• Naglis, S. 2009. Some taxonomical changes in the genus Rhaphium (Diptera, Dolichopodidae), with a key to the Rhaphium albifrons species group Mitteilungen der Schweizerischen Entomologischen Gesellschaft 82(3–4): 201–203. DOI: 10.5169/seals-402989 .

2010

• Naglis, S. 2010. New records of Diaphorinae (Diptera, Dolichopodidae) from Turkey, with the description of a new species of Diaphorus. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 83(3–4): 181–186. DOI: 10.5169/seals-403007 .
• Naglis, S. 2010. A new species of Chrysotus (Diptera, Dolichopodidae) from Switzerland. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 83(3–4): 199–205. DOI: 10.5169/seals-403009 .

2011

• Naglis, S. 2011. New records of Dolichopodinae (Diptera, Dolichopodidae) from Turkey, with the description of new species of Sybistroma Meigen and Tachytrechus Haliday. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 84(1–2): 23–33. DOI: 10.5169/seals-403019 .
• Naglis, S., Grootaert, P. & Wei, L. 2011. Srilankamyia – a new dolichopodine genus (Diptera, Dolichopodidae). Centre for Entomological Studies Ankara miscellaneous papers (155): 1–7. Internet Archive Reference page. 
• Naglis, S. & Grootaert, P. 2011. A remarkable new species of Rhaphium Meigen (Diptera, Dolichopodidae) from Sri Lanka. Zootaxa 2991: 44–48. Preview. DOI: 10.11646/zootaxa.2991.1.6 . Reference page. 

2012

• Naglis, S. & Bickel, D.J. 2012. Medetera (Diptera, Dolichopodidae) of Sri Lanka. Zootaxa 3188: 55–63. Preview Reference page. 
• Naglis, S. & Grootaert, P. 2012. Review of the genus Griphophanes Grootaert & Meuffels (Diptera, Dolichopodidae), with the description of ten new species from Sri Lanka. Zootaxa 3525: 51–64. Preview Reference page. 

2013

• Naglis, S. 2013. New records of Medeterinae (Diptera, Dolichopodidae) from Turkey, with the description of three new species of Medetera Fischer von Waldheim. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 86(3–4): 165–174. DOI: 10.5169/seals-403069 . Reference page. 
• Naglis, S., Grootaert, P. & Brooks, S.E. 2013. Phoomyia, a new genus of Dolichopodinae from the Oriental Region (Diptera: Dolichopodidae). Zootaxa 3666(1): 93–99. DOI: 10.11646/zootaxa.3666.1.9 . [Erratum: 3691(1): 200. DOI: 10.11646/zootaxa.3691.1.10 ]. Reference page. 
• Naglis, S., Grootaert, P. & Brooks, S.E. 2013. Erratum: STEFAN NAGLIS, PATRICK GROOTAERT& SCOTT E. BROOKS (2013) Phoomyia, a new genus of Dolichopodinae from the Oriental Region (Diptera: Dolichopodidae). Zootaxa, 3666(1), 83–99. Zootaxa 3691(1): 200–200. DOI: 10.11646/zootaxa.3691.1.10 Reference page. 

2014

• Naglis, S. 2014. Order Diptera, family Dolichopodidae. Two new genera of the subfamily Diaphorinae. Pp 725–731. In: van Harten, A. (ed.) Arthropod fauna of the United Arab Emirates. Volume 5. Department of the (UAE) President's Affairs, UAE. 744 pp. ISBN 9789948220862 DOI: 10.5167/uzh-109651 PDF Reference page. 
• Naglis, S. & Negrobov, O.P. 2014. Re-description of Medetera glaucella Kowarz, 1878 (Diptera, Dolichopodidae) based on type material. Zootaxa 3796(1): 194–196. DOI: 10.11646/zootaxa.3796.1.10 . Reference page. 

2015

• Naglis, S. 2015. Three new species of long-legged flies (Diptera, Dolichopodidae) for the Swiss fauna. Mitteilungen der Schweizerischen Entomologischen Gesellschaft 88(3–4): 341–345. DOI: 10.5169/seals-583856 .
• Naglis, S. & Barták, M. 2015. Dolichopodidae (Diptera) from the Iberian Peninsula, with description of three new species. Zootaxa 3964(1): 125–137. DOI: 10.11646/zootaxa.3964.1.9 Preview (PDF). Reference page. 
• Negrobov, O.P. & Naglis, S. 2015. Two new species of Medetera Fischer von Waldheim (Diptera, Dolichopodidae) from Russia and Mongolia. Zootaxa 3964(3): 386–390. DOI: 10.11646/zootaxa.3964.3.8 . Preview (PDF) Reference page. 

2016

• Negrobov, O.P. & Naglis, S. 2016. Palaearctic species of the genus Medetera (Diptera: Dolichopodidae). Zoosystematica Rossica 25(2): 333–379. DOI: 10.31610/zsr/2016.25.2.333 . Reference page. 

2017

• Naglis, S. 2017. A new species of Systenus Loew (Diptera, Dolichopodidae) from Croatia. Alpine Entomology 1: 39–41. DOI: 10.3897/alpineentomology.1.20462. Reference page. 
• Naglis, S. & Negrobov, O.P. 2017. West Palaearctic species of the Hercostomus species-group III (Diptera, Dolichopodidae), with description of a new species from Turkey. Alpine Entomology 1: 33–38. DOI: 10.3897/alpento.1.20463 . Reference page. 

2018

• Borkent, A., Brown, B.V., Adler, P.H., Amorim, D. de S., Barber, K.N., Bickel, D.J., Boucher, S., Brooks, S.E., Burger, J., Burington, Z.L., Capellari, R.S., Costa, D.N.R., Cumming, J.M., Curler, G., Dick, C.W., Epler, J.H., Fisher, E., Gaimari, S.D., Gelhaus, J., Grimaldi, D.A., Hash, J., Hauser, M., Hippa, H., Ibáñez-Bernal, S., Jaschhof, M., Kameneva, E.P., Kerr, P.H., Korneyev, V., Korytkowski, C.A., Kung, G-A., Kvifte, G.M., Lonsdale, O., Marshal, S.A., Mathis, W.N., Michelsen, V., Naglis, S., Norrbom, A.L., Paiero, S.M., Pape, T., Pereira-Colavite, A., Pollet, M., Rochefort, S., Rung, A., Runyon, J., Savage, J., Silva, V.C., Sinclair, B.J., Skevington, J.H., Stireman, J.O. III, Swann, J., Vilkamaa, P., Wheeler, T., Whitworth, T.L., Wong, M.A., Wood, D.M., Woodley, N.E., Yau, T., Zavortnik, T.J. & Zumbado, M.A. 2018. Remarkable fly (Diptera) diversity in a patch of Costa Rican cloud forest: Why inventory is a vital science. Zootaxa 4402(1): 53–90. DOI: 10.11646/zootaxa.4402.1.3. Full article (PDF) Reference page. 

2020

• Negrobov, O.P. & Naglis, S. 2020. Two new species of Thrypticus Gerstäcker from Turkey (Diptera, Dolichopodidae), with checklist and key to Palaearctic species. Zootaxa 4858(1): 111–125. DOI: 10.11646/zootaxa.4858.1.8 . Reference page. 

2021

• Naglis, S. & Negrobov, O.P. 2021. Review of the genus Guzeriplia (Diptera: Dolichopodidae) with description of a new species. Zoosystematica Rossica 30(1): 3–7. DOI: 10.31610/zsr/2021.30.1.3 . Reference page. 

2022

• Kechev, M., Naglis, S. & Negrobov, O.P. 2022. A new species Chrysotus hubenovi and new data on the family Dolichopodidae (Diptera) of Bulgaria. Zoosystematica Rossica 31(1): 27-41. DOI: 10.31610/zsr/2022.31.1.27 . Reference page.