Sulfolobales

Sulfolobales is an order of archaeans in the class Thermoprotei.[1]

Sulfolobales
Electron micrograph of Sulfolobus infected with Sulfolobus virus STSV1. Bar = 1 μm.
Scientific classification Edit this classification
Domain: Archaea
Kingdom: Proteoarchaeota
Superphylum: TACK group
Phylum: Thermoproteota
Class: Thermoprotei
Order: Sulfolobales
Stetter, 1989
Family

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and National Center for Biotechnology Information (NCBI)[1]

16S rRNA based LTP_06_2022[3][4][5] 53 marker proteins based GTDB 08-RS214[6][7][8]
Fervidicoccales

Fervidicoccaceae

Desulfurococcales 2

"Ignicoccaceae"

Desulfurococcaceae 2

Desulfurococcales

"Ignisphaeraceae"

Pyrodictiaceae

Desulfurococcaceae

Caldisphaeraceae

Acidilobaceae

Sulfolobales

Sulfolobaceae
Sulfolobales

Desulfurococcaceae

Fervidicoccaceae

Pyrodictiaceae

"Ignicoccaceae"

Acidilobaceae

"Ignisphaeraceae"

Zestosphaera {NBVN01}

Sulfolobaceae

DNA transfer

Exposure of Sulfolobus solfataricus to the DNA damaging agents UV-irradiation, bleomycin or mitomycin C induces cellular aggregation.[9] Other physical stressors, such as pH or temperature shift, do not induce aggregation, suggesting that induction of aggregation is caused specifically by DNA damage. Ajon et al.[10] showed that UV-induced cellular aggregation mediates chromosomal marker exchange with high frequency. Recombination rates exceeded those of uninduced cultures by up to three orders of magnitude. Frols et al.[9][11] and Ajon et al.[10] hypothesized that the UV-inducible DNA transfer process and subsequent homologous recombinational repair represents an important mechanism to maintain chromosome integrity. This response may be a primitive form of sexual interaction, similar to the more well-studied bacterial transformation that is also associated with DNA transfer between cells leading to homologous recombinational repair of DNA damage. In another related species, Sulfolobus acidocaldarius, UV-irradiation also increases the frequency of recombination due to genetic exchange.[12]

The ups operon

The ups (UV-induced pilus) operon of Sulfolobus species is highly induced by UV irradiation. The pili encoded by this operon are employed in promoting cellular aggregation, which is necessary for subsequent DNA exchange between cells, resulting in homologous recombination.[13]

A study of the Sulfolobales acidocaldarius ups operon showed that one of the genes downstream of the operon, saci-1497, encodes an endonuclease III that nicks UV-damaged DNA; and another gene of the operon, saci-1500, encodes a RecQ-like helicase that is able to unwind homologous recombination intermediates such as Holliday junctions.[13] It was proposed that Saci-1497 and Saci-1500 function in an homologous recombination-based DNA repair mechanism that uses transferred DNA as a template.[13] Thus it is thought that the ups system in combination with homologous recombination provide a DNA damage response which rescues Sulfolobales from DNA damaging threats.[13]

See also

References
  1. Sayers; et al. "Sulfolobales". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 10 May 2023.
  2. J.P. Euzéby. "Sulfolobales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 10 May 2023.
  3. "The LTP". Retrieved 10 May 2023.
  4. "LTP_all tree in newick format". Retrieved 10 May 2023.
  5. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  6. "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  7. "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  8. "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
  9. Fröls S, Ajon M, Wagner M, Teichmann D, Zolghadr B, Folea M, Boekema EJ, Driessen AJ, Schleper C, Albers SV (2008). "UV-inducible cellular aggregation of the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by pili formation" (PDF). Mol. Microbiol. 70 (4): 938–52. doi:10.1111/j.1365-2958.2008.06459.x. PMID 18990182.
  10. Ajon M, Fröls S, van Wolferen M, Stoecker K, Teichmann D, Driessen AJ, Grogan DW, Albers SV, Schleper C (2011). "UV-inducible DNA exchange in hyperthermophilic archaea mediated by type IV pili" (PDF). Mol. Microbiol. 82 (4): 807–17. doi:10.1111/j.1365-2958.2011.07861.x. PMID 21999488.
  11. Fröls S, White MF, Schleper C (2009). "Reactions to UV damage in the model archaeon Sulfolobus solfataricus". Biochem. Soc. Trans. 37 (Pt 1): 36–41. doi:10.1042/BST0370036. PMID 19143598.
  12. Wood ER, Ghané F, Grogan DW (1997). "Genetic responses of the thermophilic archaeon Sulfolobus acidocaldarius to short-wavelength UV light". J. Bacteriol. 179 (18): 5693–8. doi:10.1128/jb.179.18.5693-5698.1997. PMC 179455. PMID 9294423.
  13. van Wolferen M, Ma X, Albers SV (2015). "DNA Processing Proteins Involved in the UV-Induced Stress Response of Sulfolobales". J. Bacteriol. 197 (18): 2941–51. doi:10.1128/JB.00344-15. PMC 4542170. PMID 26148716.

Further reading

Scientific journals

Scientific books
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