Flavobacterium

Flavobacterium
Columnaris disease (Flavobacterium columnare) in the gill of a chinook salmon
Columnaris disease (Flavobacterium columnare) in the gill of a chinook salmon
Scientific classification
Domain: Bacteria
Phylum: Bacteroidota
Class: Flavobacteriia
Order: Flavobacteriales
Family: Flavobacteriaceae
Genus: Flavobacterium
Bergey et al. 1923 (Approved Lists 1980)
Species

See text

Flavobacterium is a genus of Gram-negative, nonmotile and motile, rod-shaped bacteria that consists of 130 recognized species.[1][2] Flavobacteria are found in soil and fresh water in a variety of environments. Several species are known to cause disease in freshwater fish.[3]

Flavobacterium psychrophilum causes the bacterial cold water disease on salmonids and the rainbow trout fry disease on rainbow trout. F. columnare causes the cotton-wool disease on freshwater fishes. F. branchiophilum causes the bacterial gill disease on trout. Another member of this genus, F. okeanokoites is the original source for the type IIs restriction endonuclease FokI, used in Zinc finger nucleases and TALENs.[4]

Nylon-eating bacteria are a strain of Flavobacterium that is capable of digesting certain by-products of nylon 6 manufacture.

Species

The genus Flavobacterium comprises the following species:

F. acidificum[1]
F. aciduliphilum[1]
F. acidurans[1]
F. ahnfeltiae[1]
F. algicola[1]
F. anatoliense[1]
F. anhuiense[1]
F. antarcticum[1]
F. aquaticum[1]
F. akiainvivens
F. aquatile
F. aquicola[1]
F. aquidurense[1]
F. araucananum[1]
F. arcticum[1]
F. arsenatis[1]
F. arsenitoxidans[1]
F. aureus
F. banpakuense[1]
F. beibuense[1]
F. branchiarum[1]
F. branchiicola[1]
F. branchiophilum
F. breve
F. brevivitae[1]
F. buctense[1]
F. caeni[1]
F. cauense[1]
F. ceti[1]
F. cheniae[1]
F. cheonanense[1]
F. cheonhonense[1]
F. chilense[1]
F. chungangense[1]
F. chungbukense[1]
F. chungnamense[1]
F. collinsense[1]
F. collinsii[1]
F. columnare
F. compostarboris[1]
F. crassostreae[1]
F. croceum[1]
F. cucumis[1]
F. cutihirudinis[1]
F. daejeonense[1]
F. daemonensis[1]
F. dankookense[1]
F. defluvii[1]
F. degerlache[1]
F. denitrificans
F. devorans[1]
F. dispersum[1]
F. dongtanense[1]
F. eburneum[1]
F. endophyticum[1]
F. enshiense[1]
F. faecale[1]
F. ferrugineum[1]
F. filum[1]
F. flaviflagrans[1]
F. flevense
F. fluvii[1]
F. fontis[1]
F. frigidarium
F. frigidimaris[1]
F frigoris[1]
F. fryxellicola[1]
F. fulvum[1]
F. gelidilacus[1]
F. gillisiae[1]
F. ginsengisoli[1]
F. ginsenosidimutans[1]
F. glaciei[1]
F. glycines[1]
F. granuli[1]
F. halmophilum[1]
F. haoranii[1]
F. hauense[1]
F. hercynium[1]
F. hibernum[1]
F. humicola[1]
F. hydatis
F. indicum[1]
F. inkyongense[1]
F. jejuense[1]
F. johnsoniae
F. jumunjinense[1]
F. koreense[1]
F. kyungheense[1]
F. lacunae[1]
F. lacus[1]
F. limicola[1]
F. limnosediminis[1]
F. lindanitolerans[1]
F. longum[1]
F. luticocti[1]
F. lutivivi[1]
F. macrobrachii[1]
F. maotaiense[1]
F. marinum[1]
F. maris[1]
F. micromati[1]
F. mizutaii[1]
F. myungsuense[1]
F. multivorum
F. nitratireducens[1]
F. nitrogenifigens[1]
F. noncentrifugens[1]
F. notoginsengisoli[1]
F. oceanosedimentum[1]
F. omnivorum[1]
F. oncorhynchi[1]
F. okeanokoites
F. orientale[1]
F. oryzae[1]
F. palustre[1]
F. paronense[1]
F. pectinovorum
F. pedocola[1]
F. phragmitis[1]
F. piscis[1]
F. plurextorum[1]
F. ponti[1]
F. procerum[1]
F. psychrolimnae[1]
F. psychrophilum
F. qiangtangense[1]
F. rakeshii[1]
F. reichenbachii[1]
F. resistens[1]
F. rivuli[1]
F. saccharophilum
F. saliperosum[1]
F. sasangense[1]
F. segetis[1]
F. seoulense[1]
F. sinopsychrotolerans[1]
F. soli[1]
F. spartansii[1]
F. squillarum[1]
F. suaedae[1]
F. subsaxonicum[1]
F. succinans
F. suncheonense[1]
F. suzhouense[1]
F. swingsii[1]
F. tegetincola[1]
F. terrae[1]
F. terrigena[1]
F. terriphilum[1]
F. thermophilum[1]
F. tiangeerense[1]
F. tilapiae[1]
F. tistrianum[1]
F. tructae[1]
F. tyrosinilyticum[1]
F. ummariense[1]
F. urocaniciphilum[1]
F. urumqiense[1]
F. verecundum[1]
F. vireti[1]
F. weaverense[1]
F. xanthum
F. xinjiangense[1]
F. xueshanense[1]
F. yanchengense[1]
F. yonginense[1]

References

  1. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 Parte, A.C. "Flavobacterium". LPSN.
  2. ↑ Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York (2001). pp. 465-466.
  3. ↑ Bernardet, J.-F.; Segers, P.; Vancanneyt, M.; Berthe, F.; Kersters, K.; Vandamme, P. (1 January 1996). "Cutting a Gordian Knot: Emended Classification and Description of the Genus Flavobacterium, Emended Description of the Family Flavobacteriaceae, and Proposal of Flaviobacterium hydatis nom. nov. (Basonym, Cytophaga aquatalis Strohl and Tait 1978)". International Journal of Systematic Bacteriology. 46 (1): 128–148. doi:10.1099/00207713-46-1-128.
  4. ↑ Bitinaite, Jurate; Wah, David A.; Aggarwal, Aneel K.; Schildkraut, Ira (1 September 1998). "FokI dimerization is required for DNA cleavage". Proceedings of the National Academy of Sciences of the United States of America. 95 (18): 10570–10575. Bibcode:1998PNAS...9510570B. doi:10.1073/pnas.95.18.10570. PMC 27935. PMID 9724744.
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