Peter Karp (scientist)

Peter D. Karp is director of the Bioinformatics Research Group at SRI International in Menlo Park, California.[1][6] Karp leads the development of the BioCyc database collection (which includes the highly curated EcoCyc and MetaCyc databases). BioCyc databases combine genome, metabolic pathway, and regulatory information for thousands of organisms.

Peter Karp
Born
Peter D. Karp
Alma materUniversity of Pennsylvania (BA)[1]
Stanford University (PhD)
Known for
AwardsISCB Fellow (2012)[5]
Scientific career
FieldsBioinformatics
Artificial Intelligence[6]
InstitutionsSRI International
National Center for Biotechnology Information[1]
ThesisHypothesis Formation and Qualitative Reasoning in Molecular Biology (1988)
Academic advisors
Websitesri.com/about/people/peter-karp

Education

Karp received his undergraduate degree from the University of Pennsylvania. He received a Ph.D. degree in Computer Science from Stanford University. His dissertation developed qualitative reasoning and machine learning techniques for hypothesis generation in molecular biology. Karp was a postdoctoral fellow at the National Library of Medicine.

Honors and recognition

He was elected a fellow of the International Society for Computational Biology (ISCB) in 2012 for outstanding contributions to the fields of computational biology and bioinformatics.[5] He is also a Fellow of the American Association for the Advancement of Science.

References
  1. "Biographical Sketch for Peter D. Karp, Ph.D." www.ai.sri.com.
  2. Karp, Peter D.; et al. (2005). "Expansion of the BioCyc collection of pathway/genome databases to 160 genomes". Nucleic Acids Research. 33 (19): 6083–6089. doi:10.1093/nar/gki892. ISSN 0305-1048. PMC 1266070. PMID 16246909. open access
  3. Caspi, R.; Foerster, H.; Fulcher, C. A.; Kaipa, P.; Krummenacker, M.; Latendresse, M.; Paley, S.; Rhee, S. Y.; Shearer, A. G.; Tissier, C.; Walk, T. C.; Zhang, P.; Karp, P. D. (2007). "The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases". Nucleic Acids Research. 36 (Database): D623–D631. doi:10.1093/nar/gkm900. ISSN 0305-1048. PMC 2238876. PMID 17965431. open access
  4. Keseler, I. M.; et al. (2004). "EcoCyc: a comprehensive database resource for Escherichia coli". Nucleic Acids Research. 33 (Database issue): D334–D337. doi:10.1093/nar/gki108. ISSN 1362-4962. PMC 540062. PMID 15608210. open access
  5. Anon (2018). "ISCB Fellows". iscb.org. International Society for Computational Biology. Archived from the original on 2017-03-20.
  6. Peter Karp publications indexed by Google Scholar
  7. Karp, Peter Dornin (1988). Hypothesis Formation and Qualitative Reasoning in Molecular Biology. dtic.mil (PhD thesis). Stanford University. doi:10.1609/aimag.v11i4.859. OCLC 20463112. Archived from the original on June 9, 2017.


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