Second Chechen War

Chechnya and the Caucasus region

Chechnya is an area in the Northern Caucasus which has constantly fought against foreign rule, including the Ottoman Turks in the 15th century. The Russian Terek Cossack Host was established in lowland Chechnya in 1577 by free Cossacks who were resettled from the Volga to the Terek River. In 1783, the Russian Empire and the Georgian Kingdom of Kartli-Kakheti signed the Treaty of Georgievsk, under which Kartli-Kakheti became a Russian protectorate.[31] To secure communications with Georgia and other regions of the Transcaucasia, the Russian Empire began spreading its influence into the Caucasus region, starting the Caucasus War in 1817. Russian forces first moved into highland Chechnya in 1830, and the conflict in the area lasted until 1859, when a 250,000-strong army under General Aleksandr Baryatinsky broke down the highlanders' resistance. Frequent uprisings in the Caucasus also occurred during the Russo-Turkish War of 1877–78.

Following the Russian Revolution of 1917, Chechens established a short-lived Caucasian Imamate which included parts of Chechnya, Dagestan and Ingushetia; there was also the secular pan-Caucasian Mountainous Republic of the Northern Caucasus.[32] Most of the resistance was defeated by Bolshevik troops by 1922. Then, months before the creation of the Soviet Union, the Chechen Autonomous Oblast of the Russian SFSR was established. It annexed a part of territory of the former Terek Cossack Host. Chechnya and neighboring Ingushetia formed the Checheno–Ingush Autonomous Soviet Socialist Republic in 1936. In 1941, during World War II, a small-scale Chechen revolt broke out, led by Hasan Israilov. In 1944, the entire Chechen people were deported to the Kazakh SSR and Kirghiz SSR in an act of ethnic cleansing; this was done under the false pretext of Chechen mass collaboration with Nazi Germany. An estimated 1/4 to 1/3 of the Chechen population perished due the harsh conditions.[33][34][35] Many scholars recognize the deportation as an act of genocide, as did the European Parliament in 2004.[36][37][38] In 1992 the separatist government built a memorial dedicated to the victims of the acts of 1944. The pro-Russian government would later demolish this memorial.[39][40] Tombstones which were an integral part of the memorial were found planted on the Akhmad Kadyrov Square next to granite steles honoring the losses of the local pro-Russian power.[41]

A Russian helicopter downed by Chechen militants near the capital Grozny, during the First Chechen War

During the dissolution of the Soviet Union in 1991, Chechnya declared independence. In 1992, Chechen and Ingush leaders signed an agreement splitting the joint Checheno–Ingush republic in two, with Ingushetia joining the Russian Federation and Chechnya remaining independent. The tension between Chechnya and Russia over independence ultimately led to Russian intervention in the republic, in which the Russians covertly tried to oust the government of Dzhokhar Dudayev. The First Chechen War began in 1994, when Russian forces entered Chechnya on the premise of restoring constitutional order. Following nearly two years of brutal fighting, with a death toll exceeding 100,000 by some estimates, the 1996 Khasavyurt ceasefire agreement was signed and Russian troops were withdrawn from the republic.[42]

Cadets of the Ichkeria Chechen National Guard, 1999

The authority of the government in Grozny was opposed by extremist warlords like Arbi Barayev, who according to some sources was in cooperation with the FSB.[43] Kidnapping in Chechnya reached large proportions, and the total turnover reached tens of millions of dollars.[44] In 1998, a group of four Western hostages was murdered. Russian special services were accused of being involved in kidnappings.[45] In 1998, a state of emergency was declared by the authorities in Grozny. In July 1998 a confrontation occurred in Gudermes between Chechen National Guard troops and a fundamentalist faction leading to many casualties.[46]

Political tensions were fueled in part by allegedly Chechen or pro-Chechen terrorist and criminal activity in Russia, as well as by border clashes. On 16 November 1996, in Kaspiysk (Dagestan), a bomb destroyed an apartment building housing Russian border guards, killing 68 people. The cause of the blast was never determined, but many in Russia blamed Chechen separatists.[47] Three people died on 23 April 1997, when a bomb exploded in the Russian railway station of Armavir (Krasnodar Krai), and two on 28 May 1997, when another bomb exploded in the Russian railway station of Pyatigorsk (Stavropol Krai). On 22 December 1997, forces of Dagestani militants and Chechnya-based Arab warlord Ibn al-Khattab raided the base of the 136th Motor Rifle Brigade of the Russian Army in Buynaksk, Dagestan, inflicting heavy casualties.[48]

The 1997 election brought to power the separatist president Aslan Maskhadov. In 1998 and 1999, President Maskhadov survived several assassination attempts,[49] blamed on the Russian intelligence services. In March 1999, General Gennady Shpigun, the Kremlin's envoy to Chechnya, was kidnapped at the airport in Grozny and ultimately found dead in 2000 during the war. On 7 March 1999, in response to the abduction of General Shpigun, Interior Minister Sergei Stepashin called for an invasion of Chechnya. However, Stepashin's plan was overridden by the prime minister, Yevgeny Primakov.[50] Stepashin later said:[51]

The decision to invade Chechnya was made in March 1999... I was prepared for an active intervention. We were planning to be on the north side of the Terek River by August–September [of 1999] This [the war] would happen regardless to the bombings in Moscow... Putin did not discover anything new. You can ask him about this. He was the director of FSB at this time and had all the information.[52][53]

According to Robert Bruce Ware, these plans should be regarded as contingency plans. However, Stepashin did actively call for a military campaign against Chechen separatists in August 1999 when he was the prime minister of Russia. But shortly after his televised interview where he talked about plans to restore constitutional order in Chechnya, he was replaced in the PM's position by Vladimir Putin.[54]

In late May 1999, Russia announced that it was closing the Russian-Chechnya border in an attempt to combat attacks and criminal activity;[55] border guards were ordered to shoot suspects on sight.[56] On 18 June 1999, seven servicemen were killed when Russian border guard posts were attacked in Dagestan.[57] On 29 July 1999, the Russian Interior Ministry troops destroyed a Chechen border post and captured an 800-meter section of strategic road. On 22 August 1999, 10 Russian policemen were killed by an anti-tank mine blast in North Ossetia, and, on 9 August 1999, six servicemen were kidnapped in the Ossetian capital Vladikavkaz.

On 7 August 1999, Shamil Basayev together with Ibn al-Khattab, led two groups of up to 2,000 Chechen, Dagestani, Arab mujahideen from Chechnya into the neighboring Republic of Dagestan. This war saw the first (unconfirmed) use of aerial-delivered fuel air explosives (FAE) in mountainous areas, notably in the village of Tando.[58] By mid-September 1999, the militants were routed from the villages they had captured and retreated back into Chechnya. According to Russia several hundred militants were killed in the fighting and the Russian side reported 275 servicemen killed and approximately 900 wounded.[59]

Before the wake of the Dagestani campaign had settled, a series of bombings took place in Russia (in Moscow and in Volgodonsk) and in the Dagestani town of Buynaksk. On 4 September 1999, 62 people died in an apartment building housing members of families of Russian soldiers. Over the next two weeks, the bombs targeted three other apartment buildings and a mall; in total over 350 people were killed. The then Prime Minister Putin quickly blamed the attacks on Chechen militants and despite no evidence linking the bombings to Chechens; ordered the bombing campaign of Chechnya.[60] In February 2000, the US Secretary of State Madeleine Albright stated they have not seen any evidence that ties the bombings to Chechnya.[60] A Russian criminal investigation of the bombings was completed in 2002. The results of the investigation, and the court ruling that followed, concluded that they were organized by Achemez Gochiyaev, who remains at large, and ordered by Khattab and Abu Omar al-Saif (both of whom were later killed), in retaliation for the Russian counteroffensive against their incursion into Dagestan. Six other suspects have been convicted by Russian courts. However, Russian Federal Security Service (FSB) agents were caught by local police for planting one of the bombs, but were later released on orders from Moscow.[61] Many observers, including State Duma deputies Yuri Shchekochikhin, Sergei Kovalev and Sergei Yushenkov, cast doubts on the official version and sought an independent investigation. Some others, including David Satter, Yury Felshtinsky, Vladimir Pribylovsky and Alexander Litvinenko, as well as the secessionist Chechen authorities, claimed that the 1999 bombings were a false flag attack coordinated by the FSB in order to win public support for a new full-scale war in Chechnya, which boosted the popularity of Prime Minister and former FSB Director Vladimir Putin, brought the pro-war Unity Party to the State Duma in the 1999 parliamentary election, and secured Putin as president within a few months. A description of the bombings as FSB false-flag operations appears in the book Blowing Up Russia, which is banned in the Russian Federation.[62][63][64][65][66][67][68]

In late August and early September 1999, Russia mounted a massive aerial campaign over Chechnya, with the stated aim of wiping out militants who invaded Dagestan earlier in the same month. On 26 August 1999, Russia acknowledged bombing raids in Chechnya.[69] The Russian air strikes were reported to have forced at least 100,000 Chechens to flee their homes to safety; the neighbouring region of Ingushetia was reported to have appealed for United Nations aid to deal with tens of thousands of refugees.[70] On 2 October 1999, Russia's Ministry of Emergency Situations reported that 78,000 people had fled the air strikes in Chechnya; most of them went to Ingushetia, where they arrived at a rate of 5,000 to 6,000 a day.

As of 22 September 1999, Deputy Interior Minister Igor Zubov said that Russian troops had surrounded Chechnya and were prepared to retake the region, but the military planners were advising against a ground invasion because of the likelihood of heavy Russian casualties.

A mass grave in Chechnya

The Chechen conflict entered a new phase on 1 October 1999, when Russia's new Prime Minister Vladimir Putin declared the authority of Chechen President Aslan Maskhadov and his parliament illegitimate. At this time, Putin announced that Russian troops would initiate a land war but progress only as far as the Terek River, which cuts the northern third of Chechnya off from the rest of the republic. Putin's stated intention was to take control of Chechnya's northern plain and establish a cordon sanitaire against further Chechen aggression; he later recalled that the cordon alone was "pointless and technically impossible," apparently because of Chechnya's rugged terrain. According to Russian accounts, Putin accelerated a plan for a major crackdown against Chechnya that had been drawn up months earlier.[71]

The Russian army moved with ease in the wide open spaces of northern Chechnya and reached the Terek River on 5 October 1999. On this day, a bus filled with refugees was reportedly hit by a Russian tank shell, killing at least 11 civilians;[72] two days later, Russian Su-24 fighter bombers dropped cluster bombs on the village of Elistanzhi, killing some 35 people.[73] On 10 October 1999, Maskhadov outlined a peace plan offering a crackdown on renegade warlords;[73] the offer was rejected by the Russian side. He also appealed to NATO to help end fighting between his forces and Russian troops, without effect.[74]

On 12 October 1999, the Russian forces crossed the Terek and began a two-pronged advance on the capital Grozny to the south. Hoping to avoid the significant casualties that plagued the first Chechen War, the Russians advanced slowly and in force, making extensive use of artillery and air power in an attempt to soften Chechen defences. Many thousands of civilians fled the Russian advance, leaving Chechnya for neighbouring Russian republics. Their numbers were later estimated to reach 200,000 to 350,000, out of the approximately 800,000 residents of the Chechen Republic. The Russians appeared to be taking no chances with the Chechen population in its rear areas, setting up "filtration camps" in October in northern Chechnya for detaining suspected members of bandformirovaniya militant formations (literally: "bandit formations").

On 15 October 1999, Russian forces took control of a strategic ridge within artillery range of the Chechen capital Grozny after mounting an intense tank and artillery barrage against Chechen fighters. In response, President Maskhadov declared a gazavat (holy war) to confront the approaching Russian army. Martial law was declared in Ichkeria and reservists were called, but no martial law or state of emergency had been declared in Chechnya or Russia by the Russian government.[75] The next day, Russian forces captured the strategic Tersky Heights, within sight of Grozny, dislodging 200 entrenched Chechen fighters. After heavy fighting, Russia seized the Chechen base in the village of Goragorsky, west of the city.[76]

On 21 October 1999, a Russian Scud short-range ballistic missile strike on the central Grozny marketplace killed more than 140 people, including many women and children, and left hundreds more wounded. A Russian spokesman said the busy market was targeted because it was used by separatists as an arms bazaar. Eight days later, Russian aircraft carried out a rocket attack on a large convoy of refugees heading into Ingushetia, killing at least 25 civilians including Red Cross workers and journalists.[77] Two days later Russian forces conducted a heavy artillery and rocket attack on Samashki; some claimed that civilians were killed in Samashki in revenge for the heavy casualties suffered there by Russian forces during the first war.[78]

On 12 November 1999, the Russian flag was raised over Chechnya's second largest city, Gudermes, when the local Chechen commanders, the Yamadayev brothers, defected to the federal side; the Russians also entered the bombed-out former Cossack village of Assinovskaya. The fighting in and around Kulary continued until January 2000. On 17 November 1999, Russian soldiers dislodged separatists in Bamut, the symbolic separatist stronghold in the first war; dozens of Chechen fighters and many civilians were reported killed, and the village was levelled in the FAE bombing. Two days later, after a failed attempt five days earlier, Russian forces managed to capture the village of Achkhoy-Martan.

On 26 November 1999, Deputy Army Chief of Staff Valery Manilov said that phase two of the Chechnya campaign was just about complete, and a final third phase was about to begin. According to Manilov, the aim of the third phase was to destroy "bandit groups" in the mountains. A few days later Russia's Defense Minister Igor Sergeyev said Russian forces might need up to three more months to complete their military campaign in Chechnya, while some generals said the offensive could be over by New Year's Day. The next day the Chechens briefly recaptured the town of Novogroznensky.[79]

On 1 December 1999, after weeks of heavy fighting, Russian forces under Major General Vladimir Shamanov took control of Alkhan-Yurt, a village just south of Grozny. The Chechen and foreign fighters inflicted heavy losses on the Russian forces, reportedly killing more than 70 Russian soldiers before retreating,[80] suffering heavy losses of their own.[81] On the same day, Chechen separatist forces began carrying out a series of counter-attacks against federal troops in several villages as well as in the outskirts of Gudermes. Chechen fighters in Argun, a small town five kilometres east of Grozny, put up some of the strongest resistance to federal troops since the start of Moscow's military offensive. The separatists in the town of Urus-Martan also offered fierce resistance, employing guerilla tactics Russia had been anxious to avoid; by 9 December 1999, Russian forces were still bombarding Urus-Martan, although Chechen commanders said their fighters had already pulled out.

On 4 December 1999, the commander of Russian forces in the North Caucasus, General Viktor Kazantsev, claimed that Grozny was fully blockaded by Russian troops. The Russian military's next task was the seizure of the town of Shali, 20 kilometres south-east of the capital, one of the last remaining separatist-held towns apart from Grozny. Russian troops started by capturing two bridges that link Shali to the capital, and by 11 December 1999, Russian troops had encircled Shali and were slowly forcing separatists out. By mid-December the Russian military was concentrating attacks in southern parts of Chechnya and preparing to launch another offensive from Dagestan.

Russian Army soldiers in Khankala, Chechnya

The Russian assault on Grozny began in early December, accompanied by a struggle for neighbouring settlements. The battle ended when the Russian army seized the city on 2 February 2000. According to official Russian figures, at least 134 federal troops and an unknown number of pro-Russian militiamen died in Grozny. The separatist forces also suffered heavy losses, including losing several top commanders. Russian Defense Minister Igor Sergeyev said that 1,500 separatists were killed trying to leave Grozny. The separatists said they lost at least 500 fighters in the mine field at Alkhan-Kala.[82] The siege and fighting devastated the capital like no other European city since World War II. In 2003, the United Nations called Grozny the most destroyed city on Earth.[83] The Russians also suffered heavy losses as they advanced elsewhere, and from Chechen counterattacks and convoy ambushes. On 26 January 2000, the Russian government announced that 1,173 servicemen had been killed in Chechnya since October,[84] more than double the 544 killed reported just 19 days earlier.[85]

Heavy fighting accompanied by massive shelling and bombing continued through the winter of 2000 in the mountainous south of Chechnya, particularly in the areas around Argun, Vedeno and Shatoy, where fighting involving Russian paratroopers had raged since 1999.

On 9 February 2000, a Russian tactical missile hit a crowd of people who had come to the local administration building in Shali, a town previously declared as one of the "safe areas", to collect their pensions. The attack was a response to a report that a group of fighters had entered the town. The missile is estimated to have killed some 150 civilians, and was followed by an attack by combat helicopters causing further casualties.[86] Human Rights Watch called on the Russian military to stop using FAE, known in Russia as "vacuum bombs", in Chechnya, concerned about the large number of civilian casualties caused by what it called "widespread and often indiscriminate bombing and shelling by Russian forces".[87] On 18 February 2000, a Russian army transport helicopter was shot down in the south, killing 15 men aboard, Russian Interior Minister Vladimir Rushailo announced in a rare admission by Moscow of losses in the war.[88]

Zhani-Vedeno ambush, March 2000

On 29 February 2000, United Army Group commander Gennady Troshev said that "the counter-terrorism operation in Chechnya is over. It will take a couple of weeks longer to pick up splinter groups now." Russia's Defense Minister, Marshal of the Russian Federation Igor Sergeyev, evaluated the numerical strength of the separatists at between 2,000 and 2,500 men, "scattered all over Chechnya." On the same day, a Russian VDV paratroop company from Pskov was attacked by Chechen and Arab fighters near the village of Ulus-Kert in Chechnya's southern lowlands; at least 84 Russian soldiers were killed in the especially heavy fighting. The official newspaper of the Russian Ministry of Defense reported that at least 659 separatists were killed, including 200 from the Middle East, figures which they said were based on radio-intercept data, intelligence reports, eyewitnesses, local residents and captured Chechens.[89] On 2 March 2000, an OMON unit from Podolsk opened fire on a unit from Sergiyev Posad in Grozny; at least 24 Russian servicemen were killed in the incident.

Fallen Russian soldiers in the Zhani-Vedeno ambush

In March a large group of more than 1,000 Chechen fighters, led by field commander Ruslan Gelayev, pursued since their withdrawal from Grozny, entered the village of Komsomolskoye in the Chechen foothills and held off a full-scale Russian attack on the town for over two weeks; they suffered hundreds of casualties, while the Russians admitted to more than 50 killed. On 29 March 2000, about 23 Russian soldiers were killed in a separatist ambush on an OMON convoy from Perm in Zhani-Vedeno.

On 23 April 2000, a 22-vehicle convoy carrying ammunition and other supplies to an airborne unit was ambushed near Serzhen-Yurt in the Vedeno Gorge by an estimated 80 to 100 "bandits", according to General Troshev. In the ensuing four-hour battle the federal side lost 15 government soldiers, according to the Russian defence minister. General Troshev told the press that the bodies of four separatist fighters were found. The Russian Airborne Troops headquarters later stated that 20 separatists were killed and two taken prisoner.[90] Soon, the Russian forces seized the last populated centres of the organized resistance. (Another offensive against the remaining mountain strongholds was launched by Russian forces in December 2000.)

Russian President Vladimir Putin established direct rule of Chechnya in May 2000. The following month, Putin appointed Akhmad Kadyrov interim head of the pro-Moscow government. This development met with early approval in the rest of Russia, but the continued deaths of Russian troops dampened public enthusiasm. On 23 March 2003, a new Chechen constitution was passed in a referendum. The 2003 Constitution granted the Chechen Republic a significant degree of autonomy, but still tied it firmly to Russia and Moscow's rule, and went into force on 2 April 2003. The referendum was strongly supported by the Russian government but met a harsh critical response from Chechen separatists; many citizens chose to boycott the ballot. Akhmad Kadyrov was assassinated by a bomb blast in 2004. Since December 2005, his son Ramzan Kadyrov, leader of the pro-Moscow militia known as kadyrovtsy, has been functioning as the Chechnya's de facto ruler. Kadyrov has become Chechnya's most powerful leader and, in February 2007, with support from Putin, Ramzan Kadyrov replaced Alu Alkhanov as president.

Guerrilla phase by year: 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009

Although large-scale fighting within Chechnya had ceased, daily attacks continued, particularly in the southern portions of Chechnya and spilling into nearby territories of the Caucasus, especially after the Caucasus Front was established. Typically small separatist units targeted Russian and pro-Russian officials, security forces, and military and police convoys and vehicles. The separatist units employed IEDs and sometimes combined for larger raids. Russian forces retaliated with artillery and air strikes, as well as counter-insurgency operations. Most soldiers in Chechnya were kontraktniki (contract soldiers) as opposed to the earlier conscripts. While Russia continued to maintain a military presence within Chechnya, federal forces played less of a direct role. Pro-Kremlin Chechen forces under the command of the local strongman Ramzan Kadyrov, known as the kadyrovtsy, dominated law enforcement and security operations, with many members (including Kadyrov himself) being former Chechen separatists who had defected since 1999. Since 2004, the Kadyrovtsy were partly incorporated into two Interior Ministry units, North and South (Sever and Yug). Two other units of the Chechen pro-Moscow forces, East and West (Vostok and Zapad), were commanded by Sulim Yamadayev (Vostok) and Said-Magomed Kakiyev (Zapad) and their men.[91]

On 16 April 2009, the head of the Federal Security Service, Alexander Bortnikov, announced that Russia had ended its "anti-terror operation" in Chechnya, claiming that stability had been restored to the territory.[92] "The decision is aimed at creating the conditions for the future normalisation of the situation in the republic, its reconstruction and development of its socio-economic sphere," Bortnikov stated. While Chechnya had largely stabilised, there were still clashes with militants in the nearby regions of Dagestan and Ingushetia.

Between June 2000 and September 2004, Chechen insurgents added suicide attacks to their tactics. During this period, there were 23 Chechen-related suicide attacks in and outside Chechnya, notably the hostage taking at an elementary school in Beslan, in which at least 334 people died.

Both sides of the war carried out multiple assassinations. The most prominent of these included the 13 February 2004 killing of exiled former separatist Chechen President Zelimkhan Yandarbiyev in Qatar, and the 9 May 2004 killing of pro-Russian Chechen President Akhmad Kadyrov during a parade in Grozny.

While anti-Russian local insurgencies in the North Caucasus started even before the war, in May 2005, two months after Maskahdov's death, Chechen separatists officially announced that they had formed a Caucasus Front within the framework of "reforming the system of military–political power." Along with the Chechen, Dagestani and Ingush "sectors," the Stavropol, Kabardin-Balkar, Krasnodar, Karachai-Circassian, Ossetian and Adyghe jamaats were included. This meant that practically all the regions of Russia's south were involved in the hostilities.

The Chechen separatist movement took on a new role as the official ideological, logistical and, probably, financial hub of the new insurgency in the North Caucasus.[93] Increasingly frequent clashes between federal forces and local militants continued in Dagestan, while sporadic fighting erupted in the other southern Russia regions, such as Ingushetia, and notably in Nalchik on 13 October 2005.

The Second Chechen War saw a new wave of war crimes and violation of international humanitarian law. Both sides have been criticised by international organizations of violating the Geneva Conventions. However, a report by Human Rights Watch states that without minimizing the abuses committed by Chechen fighters, the main reason for civilian suffering in the Second Chechen War came as a result of the abuses committed by the Russian forces on the civilian population.[94] According to Amnesty International, Chechen civilians have been purposely targeted by Russian forces, in apparent disregard of humanitarian law. The situation has been described by Amnesty International as a Russian campaign to punish an entire ethnic group, on the pretext of "fighting crime and terrorism".[95] Russian forces have throughout the campaign ignored to follow their Geneva convention obligations, and has taken little responsibility of protecting the civilian population.[94] Amnesty International stated in their 2001 report that Chechen civilians, including medical personnel, have been the target of military attacks by Russian forces, and hundreds of Chechen civilians and prisoners of war are extrajudicially executed.[96]

According to human rights activists, Russian troops systematically committed the following crimes in Chechnya: the destruction of cities and villages, not justified by military necessity; shelling and bombardment of unprotected settlements; summary extrajudicial executions and killings of civilians; torture, ill-treatment and infringement of human dignity; serious bodily harm intentionally inflicted on persons not directly participating in hostilities; deliberate strikes against the civilian population, civilian and medical vehicles; illegal detentions of the civilian population and enforced disappearances; looting and destruction of civilian and public property; extortion; taking hostages for ransom; corpse trade.[97][98][99] There were also rapes,[100][101][102] which, along with women, were committed against men.[103][104][105][106][107][108] According to the Minister of Health of Ichkeria, Umar Khanbiev, Russian forces committed organ harvesting and organ trade during the conflict.[109]

Russian forces have since the beginning of the conflict indiscriminately and disproportionately bombed and shelled civilian objects, resulting in heavy civilian casualties. In one such occasion in October 1999, ten powerful hypersonic missiles fell without warning and targeted the city's only maternity hospital, post office, mosque, and a crowded market.[110][111][112][113] Most of the casualties occurred at the central market, and the attack is estimated to have killed over 100 instantly and injuring up to 400 others. Similar incidents include the Baku–Rostov highway bombing where the Russian Air Force perpetrated repeated rocket attacks on a large convoy of refugees trying to enter Ingushetia through a supposed "safe exit".[114][115] This was repeated in December 1999 when Russian soldiers opened fire on a refugee convoy marked with white flags.[116]

The 1999–2000 siege and bombardments of Grozny caused between 5,000[117] and 8,000[118] civilians to perish. The Russian army issued an ultimatum during the Grozny-siege urging Chechens to leave the city or be destroyed without mercy.[119] Around 300 people were killed while trying to escape in October 1999 and subsequently buried in a mass grave.[120] The bombing of Grozny included banned Buratino thermobaric and fuel-air bombs, igniting the air of civilians hiding in basements.[121][122] There were also reports of the use of chemical weapons, banned according to Geneva law.[123] The Russian president Putin vowed that the military would not stop bombing Grozny until Russian troops quote 'fulfilled their task to the end.' In 2003, the United Nations called Grozny the most destroyed city on Earth.[124]

Another occasion of indiscriminate and perhaps deliberate bombardment is the bombing of Katyr-Yurt which occurred on 4–6 February 2000. The village of Katyr Yurt was far from the war's front line, and jam-packed with refugees. It was untouched on the morning of 4 February when Russian aircraft, helicopters, fuel-air bombs and Grad missiles pulverised the village. After the bombing the Russian army allowed buses in, and allowed a white-flag refugee convoy to leave after which they bombed that as well.[125] Banned Thermobaric weapons were fired on the village of Katyr-Yurt. Hundreds of civilians died as a result of the Russian bombardment and the following sweep after.[126][127] Thermobaric weapons have been used by the Russian army on several occasions according to Human Rights Watch.[128]

During the Alkhan-Yurt massacre where Russian soldiers went on a murdering spree throughout the village and summarily executing, raping, torturing, looting, burning and killing anyone in their way. Nearly all the killings were committed by Russian soldiers who were looting.[129] Civilian attempts to stop the killings were often met with death.[130] There has been no serious attempt conducted by the Russian authorities to bring to justice those accountable for the crimes committed at Alkhan-Yurt. Credible testimony suggests that Russian leadership in the region had knowledge of what was happening and simply chose to ignore it.[129] Russian military leadership dismissed the incident as "fairy tales", claiming that the bodies were planted and the slaughter fabricated in order to damage the reputation of Russian troops.[131] Russian general Vladimir Shamanov dismissed accountability for the abuses in the village saying "Don't you dare touch the soldiers and officers of the Russian army. They are doing a sacred thing today-they are defending Russia. And don't you dare sully the Russian soldier with your dirty hands!"[129]

In what is regarded as one of gravest war crimes in the war, Russian federal forces went on a village-sweep (zachistka), that involved summary executions of dozens of people, murder, looting, arson and rape of Chechens (including committing other crimes) in what is known as the Novye Aldi massacre.[132][133][134] Russian troops had cluster-bombed the village a day prior before entering the village, telling local residents to come out from their cellars for inspection the next day.[135] Upon entering the village, Russian soldiers shot their victims in cold blood, with automatic fire at close range. Victims ranged from a one-year-old babies to an 82-year-old woman. Victims were asked for money or jewelry by Russian soldiers, which served as a pretext for their execution if the amount was insufficient. Federal soldiers removed gold teeth from their victims and looted their corpses. Killings were accompanied by arson in an attempt to destroy evidence of summary executions and other civilian killings. There were several cases of rape. In one incident, Russian soldiers gang raped several women before strangling them to death. Pillage on a massive scale took place in the village, with Russian soldiers stripping the houses of civilians in broad daylight. Any attempt to make the Russian authorities take responsibilities for the massacre resulted in indignant denial. Human Rights Watch described the Russian authorities' response as "typical". A spokesperson from the Russian Ministry of Defence declared that "these assertions are nothing but a concoction not supported by fact or any proof . . . [and] should be seen as a provocation whose goal is to discredit the federal forces' operation against the terrorists in Chechnya."[135][133] An eye-witness also said that investigators from the Federal Security Service told her the massacre was probably committed by Chechen fighters "disguised as federal troops".[136]

Western European rights groups estimate there have been about 5,000 forced disappearances in Chechnya since 1999.[137] Dozens of mass graves containing hundreds of corpses have been uncovered since the start of the Chechen conflict. As of June 2008, there were 57 registered locations of mass graves in Chechnya.[138] According to Amnesty International, thousands may be buried in unmarked graves including the 5,000 civilians who disappeared since the beginning of the Second Chechen War in 1999.[139] In 2008, the largest mass grave found to date was uncovered in Grozny, containing some 800 bodies from the First Chechen War in 1995.[138] Russia's general policy to the Chechen mass graves is to not exhume them.[140]

American Secretary of State Madeleine Albright noted in her 24 March 2000 speech to the United Nations Commission on Human Rights:

We cannot ignore the fact that thousands of Chechen civilians have died and more than 200,000 have been driven from their homes. Together with other delegations, we have expressed our alarm at the persistent, credible reports of human rights violations by Russian forces in Chechnya, including extrajudicial killings. There are also reports that Chechen separatists have committed abuses, including the killing of civilians and prisoners.... The war in Chechnya has greatly damaged Russia's international standing and is isolating Russia from the international community. Russia's work to repair that damage, both at home and abroad, or its choice to risk further isolating itself, is the most immediate and momentous challenge that Russia faces.[141]

The Russian government failed to pursue any accountability process for human rights abuses committed during the course of the conflict in Chechnya. Unable to secure justice domestically, hundreds of victims of abuse have filed applications with the European Court of Human Rights (ECHR). In March 2005 the court issued the first rulings on Chechnya, finding the Russian government guilty of violating the right to life and even the prohibition of torture with respect to civilians who had died or forcibly disappeared at the hands of Russia's federal troops.[142] Many similar claims were ruled since against Russia.

Photos of the victims of the 2004 Beslan school hostage crisis

Between May 2002 and September 2004, the Chechen and Chechen-led militants, mostly answering to Shamil Basayev, launched a campaign of terrorism directed against civilian targets in Russia. About 200 people were killed in a series of bombings (most of them suicide attacks), most of them in the 2003 Stavropol train bombing (46), the 2004 Moscow metro bombing (40), and the 2004 Russian aircraft bombings (89). Two big kidnaps, the 2002 Moscow theater hostage crisis and the Beslan school hostage crisis in 2004, resulted in the deaths of many civilians. In the Moscow stand-off, FSB Spetsnaz forces stormed the building on the third day using an unknown incapacitating chemical agent that proved to be lethal without sufficient medical care, resulting in deaths of 133 out of 916 hostages. In Beslan, some 20 hostages had been murdered by their captors before the assault, and the ill-prepared assault (started hastily after explosions in the gym that had been rigged with explosives by the terrorists) resulted in 294 more casualties among the 1,128 hostages, as well as many losses among the special forces.

Russian officials have accused the bordering republic of Georgia of allowing Chechen separatists to operate on Georgian territory and permitting the flow of militants and materiel across the Georgian border with Russia. In February 2002, the United States began offering assistance to Georgia in combating "criminal elements" as well as alleged Arab mujahideen activity in Pankisi Gorge as part of the War on Terrorism. Without resistance, Georgian troops have detained an Arab man and six criminals, and declared the region under control.[143] In August 2002, Georgia accused Russia of a series of secret air strikes on purported separatists havens in the Pankisi Gorge in which a Georgian civilian was reported killed.

On 8 October 2001, a UNOMIG helicopter was shot down in Georgia in Kodori Valley gorge near Abkhazia, amid fighting between Chechens and Abkhazians, killing nine including five UN observers.[144] Georgia denied having troops in the area, and the suspicion fell on the armed group headed by Chechen warlord Ruslan Gelayev, who was speculated to have been hired by the Georgian government to wage proxy war against separatist Abkhazia. On 2 March 2004, following a number of cross-border raids from Georgia into Chechnya, Ingushetia, and Dagestan, Gelayev was killed in a clash with Russian border guards while trying to get back from Dagestan into Georgia.

On 2 February 2005, Chechen separatist president Aslan Maskhadov issued a call for a ceasefire lasting until at least 22 February (the day preceding the anniversary of Stalin's deportation of the Chechen population). The call was issued through a separatist website and addressed to President Putin, described as a gesture of goodwill. On 8 March 2005, Maskhadov was killed in an operation by Russian security forces in the Chechen community of Tolstoy-Yurt, northeast of Grozny.

Shortly following Maskhadov's death, the Chechen separatist council announced that Abdul-Khalim Sadulayev had assumed the leadership, a move that was quickly endorsed by Shamil Basayev (Basayev himself died in July 2006). On 2 February 2006, Sadulayev made large-scale changes in his government, ordering all its members to move into Chechen territory. Among other things, he removed First Vice-Premier Akhmed Zakayev from his post (although later Zakayev was appointed a Foreign Minister[145]). Sadulayev was killed in June 2006, after which he was succeeded as the separatist leader by the veteran terrorist commander Doku Umarov.

As of November 2007, there were at least seven amnesties for separatist militants, as well as federal servicemen who committed crimes, declared in Chechnya by Moscow since the start of the second war. The first one was announced in 1999 when about 400 Chechen switched sides. (However, according to Putin's advisor and aide Aslambek Aslakhanov most of them were since killed, both by their former comrades and by the Russians, who by then perceived them as a potential "fifth column".[146]) Some of the other amnesties included one during September 2003 in connection with the adoption of the republic's new constitution, and then another between mid-2006 and January 2007. In 2007, the International Helsinki Federation for Human Rights published a report entitled Amnestied People as Targets for Persecution in Chechnya, which documents the fate of several persons who have been amnestied and subsequently abducted, tortured and killed.

The first war, with its extensive and largely unrestricted coverage (despite deaths of many journalists), convinced the Kremlin more than any other event that it needed to control national television channels, which most Russians rely on for news, to successfully undertake any major national policy. By the time the second war began, federal authorities had designed and introduced a comprehensive system to limit the access of journalists to Chechnya and shape their coverage.[147]

The Russian government's control of all Russian television stations and its use of repressive rules, harassment, censorship, intimidation[148] and attacks on journalists almost completely deprived the Russian public of the independent information on the conflict. Practically all the local Chechen media are under total control of the pro-Moscow government, Russian journalists in Chechnya face intense harassment and obstruction[149] leading to widespread self-censorship, while foreign journalists and media outlets too are pressured into censoring their reports on the conflict.[150] In some cases Russian journalists reporting on Chechnya were jailed (Boris Stomakhin) or kidnapped (Andrei Babitsky), and foreign media outlets (American Broadcasting Company) banned from Russia. Russia's step came in retaliation for ABC's broadcast of an interview with Shamil Basayev, the Chechen rebel leader who ordered and/or carried out some of the worst terrorist acts in the country's history, including the school siege in Beslan that left 330 people dead.[151] The Russian-Chechen Friendship Society was shut down on "extremism and national hatred" charges. According to a 2007 poll only 11 percent of Russians said they were happy with media coverage of Chechnya.[152]

A Russian soldier stands on a mass grave of Chechen civilians in Komsomolskoye, 2000

In the Second Chechen War, over 60,000 combatants and non-combatants were killed.[153] Civilian casualty estimates vary widely. According to the pro-Moscow Chechnya government, 160,000 combatants and non-combatants died or have gone missing in the two wars, including 30,000–40,000 Chechens and about 100,000 Russians,[154][155] while separatist leader Aslan Maskhadov (deceased) repeatedly claimed about 200,000 ethnic Chechens died as a consequence of the two conflicts.[156] As in the case of military losses, these claims can not be independently verified. According to a count by the Russian human rights group Memorial in 2007, up to 25,000 civilians have died or disappeared since 1999.[157] According to Amnesty International in 2007, the second war killed up to 25,000 civilians since 1999, with up to another 5,000 people missing.[23] However, the Russian-Chechen Friendship Society set their estimate of the total death toll in two wars at about 150,000 to 200,000 civilians.[158]

Environmental agencies warn that the Russian republic of Chechnya, devastated by war, now faces ecological disaster. A former aide to Boris Yeltsin believes Russian bombing has rendered Chechnya an "environmental wasteland."[159] There is a special concern over widespread oil spills and pollution from sewers damaged by war (the water is polluted to a depth of 250 m[160]), and chemical and radioactive pollution, as a result of the bombardment of chemical facilities and storages during the conflict.[161] Chechnya's wildlife also sustained heavy damage during the hostilities, as animals that had once populated the Chechen forests have moved off to seek safer ground.[162] In 2004, Russian government has designated one-third of Chechnya a "zone of ecological disaster" and another 40% "a zone of extreme environmental distress".[163]

Chechnya is the most land mine-affected region worldwide.[164] Since 1994 there have been widespread use of mines by both sides (Russia is a party to the 1980 Convention on Conventional Weapons but not the 1996 protocol on land mines and other devices). The most heavily mined areas of Chechnya are those in which separatists continued to put up resistance, namely the southern regions, as well as the borders of the republic.[165] No humanitarian mine clearance has taken place since the HALO Trust was evicted by Russia in December 1999. In June 2002, Olara Otunnu, the UN official, estimated that there were 500,000 land mines placed in the region. UNICEF has recorded 2,340 civilian land mine and unexploded ordnance casualties occurring in Chechnya between 1999 and the end of 2003.

Military casualty figures from both sides are impossible to verify and are generally believed to be higher. In September 2000, the Kavkaz Center compiled a list of casualties officially announced in the conflict, which, although incomplete and with little factual value, provide some minimal insight of the casualties.[166] According to the figures released by the Russian Ministry of Defence in August 2005, at least 1,250 Russian Armed Forces soldiers were killed in action in 1999–2005. This death toll did not include losses of Internal Troops, the FSB, police and local paramilitaries, of whom all at least 1,720 were killed by October 2003.[158] Independent Russian and Western estimates are much higher; the Union of the Committees of Soldiers' Mothers of Russia, for instance, estimated about 2,000 Russian Army servicemen have been killed between 1999 and 2003.[157]

The Chechens had become increasingly radicalized. Former Soviet Armed Forces officers Dzhokhar Dudayev and Aslan Maskhadov were succeeded by people who rely more on Islamist doctrine, rather than the secular nationalistic feelings of the population. While Dudayev and Maskhadov were seeking from Moscow recognition of the independence of the Chechen Republic of Ichkeria, other leaders spoke out more about the need to expel Russia from the territory of the whole North Caucasus, an impoverished mountain region inhabited mostly by Muslim, non-Russian ethnic groups.

In April 2006, asked whether negotiations with Russians are possible, the top separatist commander Doku Umarov answered: "We offered them many times. But it turned out that we constantly press for negotiations and it's as if we are always standing with an extended hand and this is taken as a sign of our weakness. Therefore we don't plan to do this any more." In the same month, the new separatist spokesman Movladi Udugov said that attacks should be expected anywhere in Russia: "Today, we have a different task on our hands – total war, war everywhere our enemy can be reached. (...) And this means mounting attacks at any place, not just in the Caucasus but in all Russia." Reflecting growing radicalization of the Chechen-led militants, Udugov said their goal was no longer Western-style democracy and independence, but the Islamist "North Caucasian Emirate".

Flag of the Caucasian Emirate

This trend ultimately resulted in the October 2007 declaration of the Caucasus Emirate by Doku Umarov where he also urged for a global Jihad, and the political schism between the moderates and the radical Islamists fighting in Chechnya and the neighbouring regions with ties in the Middle East.[167] Some commanders, still fighting along with Doku Umarov, like Anzor Astemirov, publicly denounced the idea of a global Jihad, but keep fighting for the independence of Caucasus states.[168]

The struggle garnered support from Muslim sympathizers around the world nonetheless, and some of them were willing to take up arms. Many commentators thought it was likely that Chechen fighters had links with international Islamist separatist groups. The BBC said in an online Q&A on the conflict: "It has been known for years that Muslim volunteers have traveled to Chechnya to join the fight, reportedly after attending training camps in Afghanistan or Pakistan."[157] Projecting back from the post-9/11 period, some have linked Chechen resistance to Russia to the al-Qaida global jihad movement. However, the number of foreign jihad fighters in Chechnya was at most in the hundreds.[169] Most Western observers prior to 11 September regarded the alleged al-Qaida links claimed by Russian government with skepticism. The Clinton and Bush administrations, as well as other NATO governments, uniformly dismissed Moscow's rhetoric concerning the existence of Chechens in Afghanistan and Afghans in Chechnya as Soviet-style "agitprop" (agitation-propaganda) until 11 September occurred.[170]

Islamic radicalisation also affected the Chechen separatist movement's support abroad. In 2013, the Tsarnaev brothers launched a suicide attack in Boston with a claim of jihad, accusing the United States of killing Muslims of Iraq, Afghanistan and Palestine, weakening sympathy for the Chechen resistance globally and increasing xenophobia against Chechens and Muslims in the United States.[171] Rampant Islamic terrorism in Europe and the exclusive role of the Chechens on the Islamic State of Iraq and the Levant, most notably Abu Omar al-Shishani, also put the Chechen separatist movement in jeopardy due to increasing anti-Islamic sentiment on the rise in Europe, even in some of the countries in Europe like Poland, who supported Chechens during and after conflicts with Russia.[172][173][174]

According to a 2006 report by Médecins Sans Frontières, "the majority of Chechens still struggle through lives burdened by fear, uncertainty and poverty." A survey conducted by MSF in September 2005 showed that 77% of the respondents were suffering from "discernible symptoms of psychological distress".[175]

As of 2008, the infant mortality rate stood at 17 per 1,000, the highest in Russia;[176] There are reports of a growing number of genetic disorders in babies and unexplained illnesses among school children.[161] One child in ten is born with some kind of anomaly that requires treatment. Some children whose parents can afford it are sent to the neighbouring republic of Dagestan, where treatment is better; Chechnya lacks sufficient medical equipment in most of its medical facilities.[177] According to the United Nations Children's Fund (UNICEF), since 1994 to 2008 about 25,000 children in Chechnya have lost one or both parents.[178] A whole generation of Chechen children is showing symptoms of psychological trauma. In 2006, Chechnya's pro-Moscow deputy health minister, said the Chechen children had become "living specimens" of what it means to grow up with the constant threat of violence and chronic poverty.[179] In 2007, the Chechen interior ministry has identified 1,000 street children involved in vagrancy; the number was increasing.[180][181]

According to official statistics, Chechnya's unemployment rate in August 2009 was 32.9%. By 2017, this figure had decreased to 13.9%.[182][183] Many people remain homeless because so much of Chechnya's housing was destroyed by the Russian federal forces and many people have not yet been given compensation.[184] Not only the social (such as housing and hospitals) and economic infrastructure but also the foundations of culture and education, including most of educational and cultural institutions, were destroyed over the course of the two wars in Chechnya.[185] However, ongoing reconstruction efforts have been rebuilding the region at a quick pace over the past few years, including new housing, facilities, paved roads and traffic lights, a new mosque, and restoration of electricity to much of the region.[186] Governmental, social and commercial life remain hobbled by bribery, kidnapping, extortion and other criminal activity; reports by the Russian government estimate that the organized crime sector is twice the Russian average and the government is widely perceived to be corrupt and unresponsive.[187]

Hundreds of thousands of Chechens were displaced by the conflict, including 300,000 at the height of the conflict in 2000.[157] Most of them were displaced internally in Chechnya and in neighbouring republic of Ingushetia, but thousands of refugees also went into exile, with, as of 2008, most of them residing in the European Union countries.

The start of the war bolstered the domestic popularity of Vladimir Putin as the campaign was started one month after he had become Russian prime minister.[152] The conflict greatly contributed to the deep changes in the Russian politics and society.[188]

Since the Chechen conflict began in 1994, cases of young veterans returning embittered and traumatized to their home towns were reported all across Russia. Psychiatrists, law-enforcement officials, and journalists started calling the condition of psychologically scarred soldiers "Chechen syndrome" (CS), drawing a parallel with the post-traumatic stress disorders suffered by Soviet soldiers who fought in Afghanistan. According to Yuri Alexandrovsky, deputy director of the Moscow Serbsky Institute in 2003, at least 70% of the estimated 1.5 million Chechnya veterans suffered CS.[189] Many of the veterans came back alcoholic, unemployable and antisocial.[188] Thousands were also physically disabled for life and left with very limited help from the government.[190]

According to the 2007 study by Memorial and Demos human rights organisations, Russian policemen lost their qualifications and professional skills during their duty tours in Chechnya.[191] The conflict was linked to the rising brutality and general criminalisation of the Russian police forces. According to human rights activists and journalists, tens of thousands of police and security forces that went to Chechnya learned patterns of brutality and impunity and brought them to their home regions, often returning with disciplinary and psychological problems. Reliable numbers on police brutality are hard to come by, but in a statement released in 2006, the internal affairs department of Russia's Interior Ministry said that the number of recorded crimes committed by police officers rose 46.8% in 2005. In one nationwide poll in 2005, 71% of respondents said they didn't trust their police at all; in another, 41% Russians said they lived in fear of police violence.[192][193] According to Amnesty International, torture of detainees in Russia had become endemic.[188] Since 2007, police officers from outside the Caucasus were not only being sent to Chechnya, but to all the region's republics.[191]

The wars in Chechnya and associated Caucasian terrorism in Russia were major factors in the growth of intolerance, xenophobia, and racist violence in Russia, directed in a great part against the people from the Caucasus.[188] The Russian authorities were unlikely to label random attacks on people of non-Russian ethnicity as racist, preferring to call it "hooliganism". The number of murders officially classified as racist more than doubled in Russia between 2003 and 2004. The violence included acts of terrorism such as the 2006 Moscow market bombing which killed 13 people.[194][195] In 2007, 18-year-old Artur Ryno claimed responsibility for 37 racially motivated murders in the course of one year, saying that "since school [he] hated people from the Caucasus."[196] On 5 June 2007, an anti-Chechen riot involving hundreds of people took place in the town of Stavropol in southern Russia. Rioters demanded the eviction of ethnic Chechens following the murder of two young Russians who locals believed were killed by Chechens. The event revived memories of a recent clash between Chechens and local Russians in Kondopoga, when two Russians were killed over an unpaid bill.[197] The Caucasians also face ethnic-related violence in the ranks of Russian Army.[198]

• Coene, Frederik (2009). The Caucasus - An Introduction. Routledge. ISBN 978-1-135-20302-3.