List of Archaea genera
This article lists the genera of the Archaea. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[2]
Phylogeny
National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups.[3][4][5][6][7]
Cladogram was taken from the GTDB release 07-RS207 (8th April 2022).[8][9][10] The position of clades with a "question mark" are based on the additional phylogeny of the 16S rRNA-based LTP_12_2021 by The All-Species Living Tree Project.[11][12][13]
|
Phylum "Altarchaeota"
Order "Altarchaeales"
- Family "Altarchaeaceae" corrig. Probst et al. 2014
- "Candidatus Altarchaeum" corrig. Probst et al. 2014
Phylum "Iainarchaeota"
Order 0-14-0-20-30-16
- Family CSSED10-239
- "Candidatus Forterrea" Probst & Banfield 2017
Order "Iainarchaeales"
- Family "Iainarchaeaceae" Rinke et al. 2020
- "Candidatus Iainarchaeum" Rinke et al. 2013
Phylum "Micrarchaeota"
| Phylogeny of Micrarchaeota[8][9][10] | ||||||||||||||||||||||||||||||||||||||||||||||||
|
Order "Norongarragalinales"
- Family "Norongarragalinaceae" Vázquez-Campos et al. 2021
- "Candidatus Norongarragalina" Vázquez-Campos et al. 2021
Order "Micrarchaeales"
- Family "Micrarchaeaceae" Vázquez-Campos et al. 2021
- "Candidatus Mancarchaeum" Golyshina et al. 2017
- "Candidatus Micrarchaeum" Baker et al. 2010
Order "Burarchaeales"
- Family "Burarchaeaceae" Vázquez-Campos et al. 2021
- "Candidatus Burarchaeum" Vázquez-Campos et al. 2021
Order "Fermentimicrarchaeales"
- Family "Fermentimicrarchaeaceae" Kadnikov et al. 2020 (Sv326)
- "Candidatus Fermentimicrarchaeum" Kadnikov et al. 2020
Order "Gugararchaeales"
- Family "Gugararchaeaceae" Vázquez-Campos et al. 2021
- "Candidatus Gugararchaeum" Vázquez-Campos et al. 2021
Order "Anstonellales"
- Family "Anstonellaceae" Vázquez-Campos et al. 2021
- "Candidatus Anstonella" Vázquez-Campos et al. 2021
- Family "Bilamarchaeaceae" Vázquez-Campos et al. 2021
- "Candidatus Bilamarchaeum" Vázquez-Campos et al. 2021
Phylum "Undinarchaeota"
Order "Undinarchaeales"
- Family "Naiadarchaeaceae" Dombrowski et al. 2020
- "Candidatus Naiadarchaeum" Dombrowski et al. 2020
- Family "Undinarchaeaceae" Dombrowski et al. 2020
- "Candidatus Undinarchaeum" Dombrowski et al. 2020
Phylum "Huberarchaeaota"
Order "Huberarchaeales"
- Family "Huberarchaeaceae" Rinke et al. 2020
- "Candidatus Huberarchaeum" corrig. Schwank et al. 2019
Phylum "Aenigmatarchaeota"
Order "Aenigmatarchaeales"
- Family "Aenigmatarchaeaceae" corrig. Rinke et al. 2020
- "Candidatus Aenigmatarchaeum" corrig. Rinke et al. 2013
Phylum "Nanohalarchaeota"
| Phylogeny of Nanohalobiaceae[8][9][10] | |||||||||||||||
|
Order "Nanohalarchaeales"
- Family "Nanohalarchaeaceae"
- ?"Candidatus Nanohalarchaeum" corrig. Hamm et al. 2019
Order "Nanohalobiales"
- Family "Nanohalobiaceae" La Cono et al. 2020
- ?"Candidatus Haloredivivus" Ghai et al. 2011
- ?"Candidatus Nanopetraeus" corrig. Crits‐Christoph et al. 2016
- "Candidatus Nanohalobium" La Cono et al. 2020
- "Candidatus Nanosalina" Narasingarao et al. 2012
- "Candidatus Nanosalinicola" corrig. Narasingarao et al. 2012
Phylum "Nanoarchaeota"
| Phylogeny of "Nanoarchaeota"[8][9][10] | |||||||||||||||||||||||||||||||||||||||
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Order Nanobdellales
- Family Nanobdellaceae Kato et al. 2022
- ?Nanobdella Kato et al. 2022
Nanoarchaeia incertae sedis
- "Mamarchaeales"
- "Pacearchaeales" (DHVE-5, DUSEL-1)
- "Wiannamattarchaeales" Vazquez-Campos et al. 2019 (LFWA-II, Eury4AB)
- "Woesearchaeales" (DHVE-6)
Order "Tiddalikarchaeales"
- Family "Tiddalikarchaeaceae" Vázquez-Campos et al. 2021
- "Candidatus Tiddalikarchaeum" Vázquez-Campos et al. 2021
Order "Parvarchaeales"
- Family "Acidifodinimicrobiaceae" Luo et al. 2020
- ?"Candidatus Acidifodinimicrobium" Luo et al. 2020
- Family "Parvarchaeaceae" Rinke et al. 2020
- "Candidatus Parvarchaeum" Baker et al. 2010 (ARMAN 4 & 5)
Order "Nanoarchaeales"
- Family "Nanoarchaeaceae" Huber et al. 2011
- "Nanoarchaeum" Huber et al. 2002
- Family "Nanopusillaceae" Huber et al. 2011
- "Candidatus Nanoclepta" St. John et al. 2019
- "Candidatus Nanopusillus" Wurch et al. 2016
Phylum "Asgardaeota"
| Phylogeny of Asgardaeota[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Order "Borrarchaeales"
- Family "Borrarchaeaceae" Liu et al. 2020
- "Candidatus Borrarchaeum" Liu et al. 2020
Order "Sifarchaeales"
- Family "Sifarchaeaceae" Sun et al. 2021
- "Candidatus Sifarchaeum" corrig. Farag, Zhao & Biddle 2020
Order "Wukongarchaeales"
- Family "Wukongarchaeaceae" Liu et al. 2020
- "Candidatus Wukongarchaeum" Liu et al. 2020
Heimdallarchaeia Incertae sedis
- "Gerdarchaeales"
- "Heimdallarchaeales"
Order "Hodarchaeales"
- Family "Hodarchaeaceae" Liu et al. 2020
- "Candidatus Hodarchaeum" Liu et al. 2020
Order "Kariarchaeales"
- Family "Kariarchaeaceae" Liu et al. 2020
- "Candidatus Kariarchaeum" Liu et al. 2020
Order "Jordarchaeales"
- Family "Jordarchaeaceae" Sun et al. 2021
- "Candidatus Jordarchaeum" Sun et al. 2021
Order "Odinarchaeales"
- Family "Odinarchaeaceae" Tamarit et al. 2022
- "Candidatus Odinarchaeum" Tamarit et al. 2021
Order "Baldrarchaeales"
- Family "Baldrarchaeaceae" Liu et al. 2020
- "Candidatus Baldrarchaeum" Liu et al. 2020
Order "Thorarchaeales"
- Family "Thorarchaeaceae" (MBG-B)
Order "Hermodarchaeales"
- Family "Hermodarchaeaceae" Liu et al. 2020
- "Candidatus Hermodarchaeum" Liu et al. 2020
Order "Lokiarchaeales"
- Family "Lokiarchaeaceae" Vanwonterghem et al. 2016
- "Candidatus Lokiarchaeum" corrig. Spang et al. 2015 (MBGB, DSAG)
- Family "MK-D1"
- "Candidatus Promethearchaeum" corrig. Imachi, Nobu & Takai 2020
Phylum "Thermoproteota"
| Phylogeny of Thermoproteota[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Thermoproteota Incertae sedis
- "Bathyarchaeia" Meng et al. 2014
- "Brockarchaeia"
Order "Korarchaeales"
- Family "Korarchaeaceae" Rinke et al. 2020
- "Candidatus Korarchaeum" Elkins et al. 2008
- "Candidatus Methanodesulfokora" McKay et al. 2019
Order "Caldarchaeales"
- Family "Caldarchaeaceae" Rinke et al. 2020
- "Candidatus Caldarchaeum" corrig. Nunoura et al. 2011 (HWCGI)
- ?"Candidatus Calditenuis" corrig. Beam et al. 2016
Nitrososphaeria Incertae sedis
- "Cenoporarchaeum" corrig. Zhang et al. 2019
- "Candidatus Gigantothauma" corrig. Muller et al. 2010
- "Candidatus Nitrosodeserticola" Hwang et al. 2021
- "Candidatus Benthortus" Buessecker et al. 2022
Order "Geothermarchaeales"
- Family "Geothermarchaeaceae"
Order "Conexivisphaerales"
- Family "Conexivisphaeraceae" Kato et al. 2021 (THSC Group)
- Conexivisphaera Kato et al. 2021
Order Nitrososphaerales
| Phylogeny of Nitrososphaerales[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||
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- Family "Methylarchaceae" Hua et al. 2019
- "Candidatus Methylarchaeum" Hua et al. 2019
- Family "Nitrosocaldaceae" Qin et al. 2016
- ?"Candidatus Nitrosothermus" Luo et al. 2021
- "Candidatus Nitrosocaldus" de la Torre et al. 2008
- Family Nitrososphaeraceae Stieglmeier et al. 2014
- "Candidatus Nitrosocosmicus" corrig. Lehtovirta-Morley et al. 2016
- ?"Candidatus Nitrosopolaris" Pessi, Rutanen & Hultman 2022
- Nitrososphaera Stieglmeier et al. 2014
- Family Nitrosopumilaceae Qin et al. 2017
- ?"Candidatus Nitrosospongia" Moeller et al. 2019
- "Cenarchaeum" DeLong & Preston 1996
- Nitrosarchaeum corrig. Jung et al. 2018
- "Candidatus Nitrosopelagicus" Santoro et al. 2015
- Nitrosopumilus Qin et al. 2017
- "Candidatus Nitrosotalea" Lehtovirta 2011
- "Candidatus Nitrosotenuis" Lebedeva et al. 2013
Order "Methanohydrogenicales"
- Family "Methanohydrogenicaceae" Berghuis et al. 2019
- ?"Candidatus Methanohydrogenicus" Berghuis et al. 2019
Order "Methanomediales"
- Family "Methanomediaceae" Berghuis et al. 2019
- ?"Candidatus Methanomedium" Berghuis et al. 2019
Order "Methanomethylarchaeales"
- Family "Methanomethylarchaeceae" corrig. Hua et al. 2019
- ?"Candidatus Methanomethylarchaeum" corrig. Hua et al. 2019
Order "Methanomethylovorales"
- Family "Methanomethylovoraceae" Hua et al. 2019
- ?"Candidatus Methanomethylovorus" Hua et al. 2019
Order "Nezhaarchaeales"
- Family "Methanohydrogenotrophicaceae" Hua et al. 2019
- ?"Candidatus Methanogearchaeum" corrig. Hua et al. 2019
- ?"Candidatus Methanohydrogenotrophicum" Hua et al. 2019
Order "Methanomethylicales"
- Family "Candidatus Methanomethylicaceae" corrig. Vanwonterghem et al. 2016
- "Candidatus Methanomethylicus" Vanwonterghem et al. 2016
- "Candidatus Methanosuratinicola" corrig. Vanwonterghem et al. 2016
Thermoproteia Incertae sedis
- "Gearchaeales" corrig. (NAG1/NGCI)
- "Marsarchaeales" (BE-D, NAG2, YNPFFA, NCGII)
Order Thermofilales
- Family Thermofilaceae Burggraf, Huber & Stetter 1997
- Infirmifilum Zayulina et al. 2021
- Thermofilum Zillig & Gierl 1983
Order Thermoproteales
| Phylogeny of Thermoproteales[8][9][10] | |||||||||||||||||||||||||||
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- Family Thermoproteaceae Zillig & Stetter 1982
- Pyrobaculum Huber, Kristjansson & Stetter 1988
- Thermoproteus Zillig & Stetter 1982
- Family "Thermocladiaceae" Rinke et al. 2020
- Caldivirga Itoh et al. 1999
- Thermocladium Itoh, Suzuki & Nakase 1998
- Vulcanisaeta Itoh, Suzuki & Nakase 2002
Order Sulfolobales
| Phylogeny of Sulfolobales[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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- Family Fervidicoccaceae Perevalova et al. 2010
- Fervidicoccus Perevalova et al. 2010
- Family "Ignicoccaceae" Rinke et al. 2020
- Ignicoccus Huber, Burggraf & Stetter 2000
- Family Pyrodictiaceae Burggraf, Huber & Stetter 1997
- ?Geogemma Kashefi, Holmes & Lovley 2006
- Hyperthermus Zillig, Holz & Wunderl 1991
- Pyrodictium Stetter, König & Stackebrandt 1984
- Pyrolobus Blochl et al. 1999
- Family Acidilobaceae Prokofeva et al. 2009
- Aeropyrum Sako et al. 1996
- Acidilobus Prokofeva et al. 2000
- Caldisphaera Itoh et al. 2003
- ?Stetteria Jochimsen, Peinemann-Simon & Thomm 1998
- ?Thermodiscus Stetter 2003
- Family Desulfurococcaceae Zillig & Stetter 1983
- ?Caldococcus Aoshima, Yamagishi & Oshima 1996
- Desulfurococcus Zillig & Stetter 1983
- Staphylothermus Stetter & Fiala 1986
- ?Sulfophobococcus Hensel et al. 1997
- Thermogladius Osburn & Amend 2011 ex Kochetkova et al. 2016
- Thermosphaera Huber et al. 1998
- Family "Ignisphaeraceae" Rinke et al. 2020
- Ignisphaera Niederberger et al. 2006
- Family NBVN01
- Zestosphaera St. John et al. 2021
- Family Sulfolobaceae Stetter 1989
- Acidianus Segerer et al. 1986
- "Candidatus Aramenus" Servín-Garcidueñas & Martínez-Romero 2014
- Metallosphaera Huber et al. 1989
- Saccharolobus Sakai & Kurosawa 2018
- Stygiolobus Segerer et al. 1991
- Sulfodiicoccus Sakai & Kurosawa 2017
- Sulfolobus Brock et al. 1972
- Sulfuracidifex Itoh et al. 2020
- Sulfurisphaera Kurosawa et al. 1998
- ?Sulfurococcus Golovacheva, Vale’kho & Troitskii 1995
Phylum "Hadarchaeota
Order "Hadarchaeales"
- Family "Hadarchaeaceae" Chuvochina et al. 2019
- ?"Candidatus Hadesarchaeum" Hua et al. 2019
- ?"Candidatus Methanourarchaeum" Hua et al. 2019
- "Candidatus Hadarchaeum" Chuvochina et al. 2019
Phylum Methanobacteriota_B
| Phylogeny of Thermococci[8][9][10] | |||||||||||||||||||||||||||||||||||||||
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Order "Methanofastidiosales"
- Family "Methanofastidiosaceae" Rinke et al. 2020
- "Candidatus Methanofastidiosum" corrig. Nobu et al. 2016
Order Thermococcales
- Family Thermococcaceae Zillig et al. 1988
- Palaeococcus Takai et al. 2000
- Pyrococcus Fiala & Stetter 1986
- Thermococcus Zillig 1983
Phylum Methanobacteriota_A
| Phylogeny of Methanobacteriota_A[8][9][10] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Order Methanopyrales
- Family Methanopyraceae Huber & Stetter 2002
- Methanopyrus Kurr et al. 1992
Order Methanococcales
- Family Methanocaldococcaceae Whitman 2002
- Methanocaldococcus Whitman 2002
- Family Methanococcaceae Balch & Wolfe 1981
- Methanococcus Kluyver & van Niel 1936
- Methanofervidicoccus Sakai et al. 2019
- Methanothermococcus Whitman 2002
- Methanotorris Whitman 2002
Phylum "Hydrothermarchaeota"
Order "Hydrothermarchaeales"
- Family "Hydrothermarchaeaceae" Chuvochina et al. 2019
- "Candidatus Hydrothermarchaeum" Chuvochina et al. 2019
Phylum "Methanobacteriota"
| Phylogeny of Methanobacteriota[8][9][10] | |||||||||||||||||||||||||||||||||||||||
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Order Tepidaquicellales
- Family "Tepidaquicellaceae" corrig. Kadnikov et al. 2020
- "Candidatus Tepidaquicella" corrig. Kadnikov et al. 2020
Order Methanobacteriales
- Family Methanothermaceae Stetter et al. 1982
- Methanothermus Stetter et al. 1982
- Family "Methanothermobacteraceae" Rinke et al. 2020
- Methanothermobacter Wasserfallen et al. 2000
- Family Methanobacteriaceae Barker 1956
- Methanobacterium Kluyver & van Niel 1936
- Methanobrevibacter Balch & Wolfe 1981
- Methanosphaera Miller & Wolin 1985
Phylum "Thermoplasmatota"
| Phylogeny of Thermoplasmatota[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||
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Order "Thermoprofundales"
- (MBG-D, E2)
Order MGIII
- (MGIII High GC)
- (MGIII Low GC)
Order "Poseidoniales"
- Family "Poseidoniaceae" corrig. Rinke et al. 2019
- "Candidatus Poseidonia" Rinke et al. 2019
- Family "Thalassarchaeaceae" corrig. Rinke et al. 2019
- "Candidatus Thalassarchaeum" corrig. Martin-Cuadrado et al. 2015
Order "Lunaplasmatales"
- Family "Lunaplasmataceae" Zinke et al. 2021
- ?"Candidatus Lunaplasma" Zinke et al. 2021
Order "Sysuiplasmatales"
- Family "Sysuiplasmataceae" Yuan et al. 2021
- ?"Candidatus Sysuiplasma" Yuan et al. 2021
Order "Gimiplasmatales"
- Family "Gimiplasmataceae" Hu et al. 2020
- "Candidatus Gimiplasma" Hu et al. 2020
Order Methanomassiliicoccales
| Phylogeny of Methanomassiliicoccales[8][9][10] | |||||||||||||||||||||||||||
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- ?"Candidatus Methanarcanum" Chibani et al. 2022
- Family "Methanomixtatrophicaceae" Hua et al. 2019
- ?"Candidatus Methanomixtatrophicum" Hua et al. 2019
- Family Methanomassiliicoccaceae Iino et al. 2013
- Methanomassiliicoccus Dridi et al. 2012
- Family "Methanomethylophilaceae" Gaci et al. 2014
- "Candidatus Methanogranum" corrig. Iino et al. 2013
- "Candidatus Methanomethylophilus" corrig. Borrel et al. 2012
- "Candidatus Methanoplasma" corrig. Lang et al. 2015
- "Candidatus Methanospyradousia" Gilroy et al. 2021
Order PWKY01
- Family PWKY01
- ?"Candidatus Haladaptoplasma" Zhou et al. 2022
- ?"Candidatus Haloplasma" Zhou et al. 2022 non Antunes et al. 2008
- "Candidatus Natronoplasma" Zhou et al. 2022
- ?"Candidatus Saliniplasma" Zhou et al. 2022
Order "Aciduliprofundales"
- Family "Aciduliprofundaceae" Rinke et al. 2020
- "Aciduliprofundum" Reysenbach et al. 2006 (DHVE2 group)
Order Thermoplasmatales
| Phylogeny of Thermoplasmatales[8][9][10] | |||||||||||||||||||||||||||||||||
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- Family Thermoplasmataceae Reysenbach 2002
- Acidiplasma Golyshina et al. 2009
- Cuniculiplasma corrig. Golyshina et al. 2016
- Ferroplasma Golyshina et al. 2000
- Picrophilus Schleper et al. 1996
- ?"Candidatus Scheffleriplasma" Krause et al. 2022
- Thermogymnomonas Itoh, Yoshikawa & Takashina 2007
- Thermoplasma Darland et al. 1970
Phylum "Halobacteriota"
| Phylogeny of Halobacteriota[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Halobacteriota incertae sedis
- "Candidatus Methanotowutia" Ou et al. 2022
- "Candidatus Methanoinsularis" Ou et al. 2022
- "Candidatus Methanoporticola" Ou et al. 2022
Order "Methanoflorentales"
- Family "Methanoflorentaceae" Mondav et al. 2014
- "Candidatus Methanoflorens" Mondav et al. 2014
Order "Methanoliparales"
- Family "Methanoliparaceae" Borrel et al. 2019
- "Candidatus Methanoliparum" Borrel et al. 2019
- "Candidatus Methanolliviera" Borrel et al. 2019
Order Archaeoglobales
| Phylogeny of Archaeoglobales[8][9][10] | |||||||||||||||
|
- Family "Allopolytropaceae" corrig. Boyd et al. 2019
- ?"Candidatus Allopolytropus" corrig. Boyd et al. 2019
- Family Archaeoglobaceae Huber & Stetter 2002
- ?"Candidatus Methanomixotrophus" corrig. Liu et al. 2020
- ?"Candidatus Methanoproducendum" Hua et al. 2019
- Archaeoglobus Stetter 1988
- Ferroglobus Hafenbradl et al. 1997
- Geoglobus Kashefi et al. 2002
Order "Methanophagales"
- Family "Methanophagaceae" Chadwick et al. 2022
- ?"Candidatus Methanophaga"" Chadwick et al. 2022
- ?"Candidatus Methanoalium" Chadwick et al. 2022
Order "Syntropharchaeales"
- Family "Syntropharchaeaceae" corrig. (ANME-2 cluster)
- "Candidatus Syntropharchaeum" corrig. Laso-Perez et al. 2016
Order Methanocellales
- Family Methanocellaceae Sakai et al. 2008
- Methanocella Sakai et al. 2008
Order "Methanotrichales"
- Family Methanotrichaceae Akinyemi et al. 2021
- Methanothrix Huser, Wuhrmann & Zehnder 1983
Order Methanosarcinales_A
- Family Methermicoccaceae Cheng et al. 2007
- Methermicoccus Cheng et al. 2007
Order Methanosarcinales
| Phylogeny of Methanosarcinales[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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- Family "Methanogasteraceae" Chadwick et al. 2022 (ANME-2c)
- "Candidatus Methanogaster" Chadwick et al. 2022
- Family "Methanocomedenaceae" Chadwick et al. 2022
- "Candidatus Methanocomedens" Chadwick et al. 2022 (ANME-2a)
- "Candidatus Methanomarinus" Chadwick et al. 2022 (ANME-2b)
- Family EX4572-44
- "Candidatus Ethaniperedens" corrig. Hahn et al. 2020
- Family "Methanoperedentaceae" corrig. Haroon et al. 2013
- ?"Candidatus Argarchaeum" corrig. Chen et al. 2019 (GOM arc I)
- "Candidatus Methanoperedens" Haroon et al. 2013 (ANME-2d, AAA)
- Family Methanosarcinaceae Balch & Wolfe 1981
- ?Halomethanococcus Yu & Kawamura 1988
- Methanimicrococcus corrig. Sprenger et al. 2000
- Methanococcoides Sowers & Ferry 1985
- Methanohalobium Zhilina & Zavarzin 1988
- Methanohalophilus Paterek & Smith 1988
- Methanolobus König & Stetter 1983
- Methanomethylovorans Lomans et al. 2004
- Methanosalsum Boone & Baker 2002
- Methanosarcina Kluyver & van Niel 1936
- ?"Candidatus Methanovorans" Chadwick et al. 2022 (ANME-3)
Order Methanomicrobiales
| Phylogeny of Methanomicrobiales[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Family Methanocorpusculaceae Zellner et al. 1989
- Methanocalculus Ollivier et al. 1998
- Methanocorpusculum Zellner et al. 1988
- Family "Methanofollaceae"
- Methanofollis Zellner et al. 1999
- Family "Methanosphaerulaceae" Rinke et al. 2020
- Methanosphaerula Cadillo-Quiroz et al. 2009
- Family Methanospirillaceae Boone et al. 2002
- Methanospirillum Ferry, Smith & Wolfe 1974
- Family Methanoregulaceae Sakai et al. 2012
- Methanolinea Imachi et al. 2008
- Methanoregula Brauer et al. 2011
- Family "Methanoculleaceae" Rinke et al. 2020
- Methanoculleus Maestrojun et al. 1990
- Family Methanomicrobiaceae Balch & Wolfe 1981
- Methanogenium Romesser et al. 1981
- Methanolacinia Zellner et al. 1990
- Methanomicrobium Balch & Wolfe 1981
- Methanoplanus Wildgruber et al. 1984
Order "Hikarchaeales"
- Family "Hikarchaeaceae" Martijn et al. 2020 (MG-IV)
- ?"Candidatus Hikarchaeum" Martijn et al. 2020
Order "Methanonatronarchaeales"
- Family "Methanohalarchaeaceae" Sorokin et al. 2018
- "Candidatus Methanohalarchaeum" Sorokin et al. 2018
- Family Methanonatronarchaeaceae Sorokin et al. 2018
- Methanonatronarchaeum Sorokin et al. 2018
Order Halobacteriales
| Phylogeny of Halobacteriales[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Phylogeny of Natrialbaceae[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Phylogeny of Haloferacaceae[8][9][10] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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- Halobacteriales incertae sedis
- "Haloalcalophilium" Lizama et al. 2000a
- Family "Halalkalicoccaceae"
- Halalkalicoccus Xue et al. 2005
- Family "Haladaptaceae" Rinke et al. 2020
- Haladaptatus Savage et al. 2007
- ?Halomicrococcus Chen et al 2020
- Halorussus Cui et al. 2014
- Family Halobacteriaceae
- Halanaeroarchaeum Sorokin et al. 2016
- Halarchaeum Minegishi et al. 2010
- Halobacterium Elazari-Volcani 1957
- Halocalculus Minegishi et al. 2015
- Halodesulfurarchaeum Sorokin et al. 2017
- Sala Song et al. 2022
- Salarchaeum Shimane et al. 2011
- Family "Salinarchaeaceae"
- Salinarchaeum Cui et al. 2014
- Family QS-9-68-17
- Halostella Song et al. 2016
- Family "Natronoarchaeaceae" Sorokin et al. 2022
- ?"Natranaeroarchaeum" Sorokin et al. 2021
- Natronoarchaeum Shimane et al. 2010
- Family Natrialbaceae Gupta et al. 2015
- Haloarchaeobius Makhdoumi-Kakhki et al. 2012
- Halobiforma Hezayen et al. 2002
- Halopiger Gutierrez et al. 2007
- Halorubellus Cui et al. 2014
- Halostagnicola Castillo et al. 2006
- Haloterrigena Ventosa et al. 1999
- Halovarius Mehrshad et al. 2015
- Halovivax Castillo et al. 2006
- Natrarchaeobaculum Sorokin et al. 2020
- Natrarchaeobius corrig. Sorokin et al. 2020
- Natrialba Kamekura & Dyall-Smith 1996
- Natribaculum Liu et al. 2015
- Natronobacterium Tindall et al. 1984
- Natronobiforma Sorokin et al. 2019
- Natronococcus Tindall et al. 1984
- Natronolimnobius Itoh et al. 2005
- Natronolimnohabitans Sorokin et al. 2020
- Natrinema McGenity et al. 1998
- Natronorubrum Xu et al. 1999
- Salinadaptatus Xue et al. 2020
- Saliphagus Yin et al. 2017
- Family Halococcaceae Gupta et al. 2016
- Halococcus Schoop 1935
- Family Haloarculaceae
- Halapricum Song et al. 2014
- Haloarcula Torreblanca et al. 1986
- Halocatena Verma et al. 2020
- ?Halococcoides Sorokin et al. 2019
- "Haloglomus" Duran-Viseras, Sanchez-Porro & Ventosa 2020
- Halomarina Inoue et al. 2011
- Halomicroarcula Echigo et al. 2013
- Halomicrobium Oren et al. 2002
- Halorientalis Cui et al. 2011
- Halorhabdus Waino et al. 2000
- ?Halosegnis Duran-Viseras et al. 2022
- Halosimplex Vreeland et al. 2003
- Halovenus Makhdoumi-Kakhki et al. 2012
- Natronomonas Kamekura et al. 1997
- Salinibaculum Han & Cui 2020
- ?Salinirubellus Hou et al. 2018
- Salinirussus Cui et al. 2017
- Family Haloferacaceae Gupta et al. 2015
- Halalkaliarchaeum Sorokin et al. 2019
- "Halalkalirubrum" Zuo et al. 2021
- ?"Candidatus Halectosymbiota" corrig. Filker et al. 2014
- "Halegenticoccus" Liu et al. 2019
- Halobaculum Oren et al. 1995
- Halobellus Cui et al. 2011
- ?Halobium Mori et al. 2016
- Haloferax Torreblanca et al. 1986
- Halogeometricum Montalvo-Rodriguez et al. 1998 (Halosarcina)
- Halogranum Cui et al. 2010
- Halohasta Mou et al. 2013
- Halolamina Cui et al. 2011
- Halonotius Burns et al. 2010
- Haloparvum Chen et al. 2016
- Halopelagius Cui et al. 2010
- Halopenitus Amoozegar et al. 2012
- Haloplanus Elevi Bardavid et al. 2007
- Haloprofundus Zhang et al. 2017
- Haloquadratum Burns et al. 2007
- Halorubrum McGenity & Grant 1996
- ?Halosiccatus Mehrshad et al. 2016
- ?Natronocalculus Sorokin et al. 2022
- ?Salinirubrum corrig. Cui & Qiu 2014
- Salinigranum Cui & Zhang 2014
See also
- Branching order of bacterial phyla (Woese, 1987)
- Branching order of bacterial phyla (Gupta, 2001)
- Branching order of bacterial phyla (Cavalier-Smith, 2002)
- Branching order of bacterial phyla (Rappe and Giovanoni, 2003)
- Branching order of bacterial phyla (Battistuzzi et al.,2004)
- Branching order of bacterial phyla (Ciccarelli et al., 2006)
- Branching order of bacterial phyla after ARB Silva Living Tree
- Branching order of bacterial phyla (Genome Taxonomy Database, 2018)
- Bacterial phyla
- List of bacteria genera
- List of bacterial orders
References
- J.P. Euzéby. "Archaea". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-06-27.
- Sayers; et al. "Archaea". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
- Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life". Nature Biotechnology. 36 (10): 996–1004. bioRxiv 10.1101/256800. doi:10.1038/nbt.4229. PMID 30148503. S2CID 52093100.
- Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology. 38 (9): 1079–1086. bioRxiv 10.1101/771964. doi:10.1038/s41587-020-0501-8. PMID 32341564. S2CID 216560589.
- Chaumeil, PA; Mussig, AJ; Hugenholtz, P; Parks, DH (15 November 2019). "GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database". Bioinformatics. doi:10.1093/bioinformatics/btz848. PMC 7703759. PMID 31730192.
- Almeida, Alexandre; Nayfach, Stephen; Boland, Miguel; Strozzi, Francesco; Beracochea, Martin; Shi, Zhou Jason; Pollard, Katherine S.; Sakharova, Ekaterina; Parks, Donovan H.; Hugenholtz, Philip; Segata, Nicola; Kyrpides, Nikos C.; Finn, Robert D. (20 July 2020). "A unified catalog of 204,938 reference genomes from the human gut microbiome". Nature Biotechnology. 39 (1): 105–114. doi:10.1038/s41587-020-0603-3. PMC 7801254. PMID 32690973.
- Nayfach, Stephen; et al. (9 November 2020). "A genomic catalog of Earth's microbiomes". Nature Biotechnology. 39 (4): 499–509. doi:10.1038/s41587-020-0718-6. PMC 8041624. PMID 33169036.
- "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
- "ar53_r207.sp_label". Genome Taxonomy Database. Retrieved 20 June 2022.
- "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
- "The LTP". Retrieved 23 February 2021.
- "LTP_all tree in newick format". Retrieved 23 February 2021.
- "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
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