List of bacterial orders
This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[2] and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project.[3]
Phylogeny
National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups.[4][5][6][7][8]
Cladogram was taken from [9][10][11]
|
Clade Terrabacteria
Phylum "Chloroflexota"
| Phylogeny of Chloroflexota[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Class ?"Bathosphaeria"
- "Bathosphaerales" Mehrshad et al. 2018 [DTDB tag: JG30-KF-CM66]
- Class ?"Limnocylindria"
- "Limnocylindrales" Mehrshad et al. 2018 (SL56)
- Class ?"Umbricyclopia"
- "Umbricyclopales" Mehrshad et al. 2018 (TK10)
- Class Ktedobacteria
- Ktedobacterales corrig. Cavaletti et al. 2007 (Thermogemmatisporales)
- Class Dehalococcoidia
- Dehalococcoidales Löffler et al. 2013
- Tepidiformales Kochetkova et al. 2020
- Class Anaerolineae
- ?Aggregatilineales Nakahara et al. 2019
- Anaerolineales Yamada et al. 2006
- Ardenticatenales Kawaichi et al. 2013
- Caldilineales Yamada et al. 2006
- "Promineofilales"
- Thermoflexales Dodsworth et al. 2014
- Class Chloroflexia
- Chloroflexales Gupta et al. 2013 (Herpetosiphonales, Kallotenuales)
- "Thermobaculales"
- Thermomicrobiales Garrity & Holt 2002 (Sphaerobacterales)
Phylum "Deinococcota"
- "Deinococcia"
- Deinococcales Rainey et al. 1997 (Thermales) (radio-resistant micrococci)
Phylum "Actinomycetota"
| Phylogeny of Actinomycetota[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- ?"Hakubanellales" Merino et al. 2020
- Class ?"Syntrophaliphaticia" corrig. Liu et al. 2020
- Class Coriobacteriia
- Coriobacteriales Stackebrandt et al. 1997 (Eggerthellales)
- Class Rubrobacteria
- Rubrobacterales Rainey et al. 1997
- Class Thermoleophilia
- ?"Miltoncostaeales" Li et al. 2021
- Gaiellales Albuquerque et al. 2012
- Thermoleophilales Reddy & Garcia-Pichel 2009 (Solirubrobacterales)
- Class Acidimicrobiia
- Acidimicrobiales Stackebrandt, Rainey & Ward-Rainey 1997
- "Actinomarinales" Ghai et al. 2013
- Class "Actinomycetia"
- Acidothermales Sen et al. 2014
- Actinomycetales Buchanan 1917 (Bifidobacteriales; Micrococcales; Kineosporiales)
- Euzebyales Kurahashi et al. 2010 (Egibacterales)
- Jiangellales Tang et al. 2015
- Motilibacterales Salam et al. 2020
- Mycobacteriales Janke 1924 (Corynebacteriales; Actinoplanales; Actinocatenisporales; Antricoccales; Cryptosporangiales; Frankiales; Geodermatophilales; Glycomycetales; Jatrophihabitantales; Micromonosporales; Nakamurellales; Phytomonosporales; Pseudonocardiales)
- "Nanopelagicales" Neuenschwander et al. 2018
- Nitriliruptorales Sorokin et al. 2009 (Egicoccales)
- Propionibacteriales Patrick & McDowell 2015
- Sporichthyales Nouioui et al. 2018
- Streptomycetales Kampfer 2015 (Catenulisporales)
- Streptosporangiales Goodfellow 2015
Clade Firmicutes
Firmicutes incertae sedis
- "Koleobacterales" Sakamoto et al. 2021
- Class Culicoidibacteria Neupane et al. 2020
- Culicoidibacterales Neupane et al. 2020
- Class Thermolithobacteria Sokolova et al. 2007
- Thermolithobacterales Sokolova et al. 2007
Phylum "Armatimonadota"
| Phylogeny of Armatimonadota[9][10][11] | |||||||||||||||||||||||||||
|
- Class Abditibacteriia (FBP)
- Abditibacteriales Tahon et al. 2018
- Class Fimbriimonadia
- Fimbriimonadales Im et al. 2012
- Class Chthonomonadetes
- Chthonomonadales Lee et al. 2011
- Class Armatimonadia (OP10)
- Armatimonadales Tamaki et al. 2011
- Capsulimonadales Li, Kudo & Tonouchi 2018
Phylum Eremiobacterota
| Phylogeny of Eremiobacterota[9][10][11] | |||||||||||||||
|
- Class "Xenobia" [GTDB tag: UBP9]
- "Xenobiales"
- Class "Eremiobacteriia" (WPS2)
- "Baltobacterales"
- "Eremiobacterales"
Phylum Firmicutes E
| Phylogeny of Firmicutes E[9][10][11] | |||||||||||||||
|
- Class "Thermaerobacteria"
- "Thermaerobacterales"
- Class "Sulfobacillia"
- "Sulfobacillales" Cavalier-Smith 2020
- Class "Symbiobacteriia"
- "Symbiobacteriales"
Phylum Firmicutes G
- Hydrogenispora Liu et al. 2014
- Class Limnochordia Watanabe, Kojima & Fukui 2015
- Limnochordales Watanabe, Kojima & Fukui 2015
Phylum "Halanaerobiaeota"
| Phylogeny of Halanaerobiia[9][10][11] | |||||||||||||||
|
- Class "Halanaerobiia" Cavalier-Smith 2020
- Anoxybacter Zeng et al. 2015
- Halanaerobiales corrig. Rainey & Zhilina 1995
- "Halobacteroidales"
Phylum "Desulfotomaculota"
| Phylogeny of Desulfotomaculota[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Class "Dehalobacteriia"
- "Dehalobacteriales"
- Class "Peptococcia"
- "Peptococcales"
- Thermanaerosceptrum corrig. Hamilton-Brehm et al. 2021
- Class "Desulfitobacteriia"
- "Desulfitobacteriales"
- "Heliobacteriales" Cavalier-Smith 2020
- Class "Moorellia"
- "Calderihabitantales"
- "Desulfitibacterales"
- Moorellales Lv et al. 2020
- Class "Syntrophomonadia"
- "Syntrophomonadales"
- "Thermacetogeniales"
- Class "Thermincolia"
- "Carboxydocellales"
- "Thermincolales"
- Class "Desulfotomaculia" Watanabe, Fukui & Kuever 2020
- "Ammonificales"
- "Carboxydothermales"
- "Desulfotomaculales" Watanabe, Fukui & Kuever 2020
Phylum "Selenobacteria"
| Phylogeny of Selenobacteria[9][10][11] | |||||||||||||||||||||||||||
|
- Class Negativicutes Marchandin et al. 2010
- Acidaminococcales Campbell, Adeolu & Gupta 2015
- "Anaeromusales"
- Selenomonadales Marchandin et al. 2010
- "Sporomusales" Cavalier-Smith 2006
- Veillonellales Campbell, Adeolu & Gupta 2015
Phylum Firmicutes A
| Phylogeny of Firmicutes A[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Class "Thermosediminibacteria"
- Thermosediminibacterales Zhang et al. 2019
- Class "Thermoanaerobacteria"
- "Caldanaerobiales"
- "Caldicellulosiruptorales"
- Thermoanaerobacterales Wiegel 2010
- Class "Mahellia"
- "Mahellales"
- "Caldicoprobacterales"
- "Christensenellales"
- Class Clostridiia Rainey 2010 em. Cavalier-Smith 2020
- Clostridiales Prevot 1953 s.s.
- Eubacteriales Buchanan 1917
- "Lachnospirales"
- "Lutisporales"
- "Monoglobales"
- "Oscillospirales"
- Petroclostridium Zhang et al. 2018b
- "Peptostreptococcales"
- "Saccharofermentanales"
- Tissierellales Alauzet et al. 2020
Phylum Firmicutes D
| Phylogeny of Firmicutes D[9][10][11] | |||||||||||||||
|
- Class "Proteinivoracia"
- "Proteinivoracales"
- Class "Dethiobacteria"
- "Dethiobacterales"
- Class "Natranaerobiia"
- Natranaerobiales Mesbah et al. 2007
Phylum "Bacillota"
| Phylogeny of Bacillota[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Class "Alicyclobacillia" [Firmicutes K]
- "Alicyclobacillales"
- "Kyrpidiales"
- "Tumebacillales"
- Class "Desulfuribacillia" [Firmicutes J]
- "Desulfuribacillales"
- Class "Bacillia" Cavalier-Smith 2020
- Clade DSM-22653
- "Aneurinibacillales"
- Bacillales B
- Bacillales C
- Bacillales D
- Bacillales E
- Bacillales G
- Bacillales H
- Bacillales Prevot 1953 s.s.
- "Brevibacillales"
- "Caldalkalibacillales"
- "Calditerricolales"
- Caryophanales Peshkoff 1939 [Bacillales A]
- "Erysipelotrichidae" corrig. Cavalier-Smith 2020
- Turicibacteraceae Verbarg et al. 2020
- Haloplasmatales Rainey et al. 2008
- "Izimaplasmatales"
- Acholeplasmatales Freundt et al. 1984 (Anaeroplasmatales)
- Erysipelotrichales Ludwig et al. 2010
- Mycoplasmatales Freundt 1955 (Entomoplasmatales)
- "Exiguobacterales"
- Lactobacillales Ludwig, Schleifer & Whitman 2010
- "Paenibacillales"
- "Rubeoparvulales"
- "Staphylococcales"
- "Tepidibacillales"
- "Thermicanales"
- "Thermoactinomycetales"
Clade Cyanoprokaryota
Phylum Margulisbacteria
- Class "Saganbacteria" Carnevali et al. 2018
- Class "Riflemargulisbacteria" Carnevali et al. 2019 [GTDB tag: GWF2_35_9]
- Class "Marinamargulisbacteria" Carnevali et al. 2019
- Class "Termititenacia" Utami et al. 2019
- "Termititenacales" Utami et al. 2019
Phylum Cyanobacteria
- Class "Sericytochromatia" Soo et al. 2017 [incl. "Blackallbacteria" (GTDB tag: UBA7694)]
- Class "Melainabacteria" Soo et al. 2014
- "Caenarcaniphilales" Soo et al. 2014
- "Gastranaerophilales" Soo et al. 2014
- "Obscuribacterales" Soo et al. 2014
- "Vampirovibrionales" Soo et al. 2015
- Class Gloeobacteria
- Gloeobacterales Cavalier-Smith 2002
- Class Phycobacteria
- Chroococcales Cavalier-Smith 2002
- Chroococcidiopsidales
- Nostocales
- Oscillatoriales
- Pleurocapsales
- Pseudanabenales
- Spirulinales
- Stigonematales
- Synechococcales
Clade Candidate Phyla Radiation
| Phylogeny of Patescibacteria[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Phylum "Elulota"
- Class "Elulimicrobia" Rodriguez-R et al. 2020
- "Elulimicrobiales" Rodriguez-R et al. 2020
Phylum "Patescibacteria"
| Phylogeny of Microgenomatia | |||||||||||||||||||||||||||||||||||||||||||||||||||
|
| Phylogeny of Gracilibacteria | |||||||||||||||||||||||||||||||||
|
| Phylogeny of ABY1 | |||||||||||||||||||||||||||||||||||||||||||||||||||
|
| Phylogeny of Paceibacteria | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Class "Wirthbacteria"
- Class "Dojkabacteria" (WS6)
- Class "Katanobacteria" (WWE3)
- Class "Microgenomatia"
- Clade GWA2-44-7
- Clade UBA1400
- "Curtissbacterales"
- "Daviesbacterales"
- "Gottesmanbacterales"
- "Levybacterales"
- "Roizmanbacterales"
- "Shapirobacterales"
- "Woykebacterales" (RIF34)
- Class "Gracilibacteria"
- "Abawacabacterales" (RIF46)
- "Absconditabacterales" (SR1)
- "Gracilibacterales" (GN02)
- "Fertabacterales" (DOLZORAL124_38_8)
- "Peregrinibacterales" (PER)
- "Peribacterales"
- Class "Berkelbacteria" (ACD58)
- Class "Kazanbacteria" (Kazan)
- Class "Howlettbacteria" (CPR2)
- Class "Saccharimonadia" (TM7)
- "Saccharimonadales"
- Class "Andersenbacteria" (RIF9)
- Class "Doudnabacteria" (SM2F11)
- Class "Torokbacteria"
- Class "ABY1"
- ?"Brownbacterales"
- "Buchananbacterales" (RIF37)
- "Falkowbacterales"
- "Jacksonbacterales" (RIF38)
- "Kerfeldbacterales" (RIF4)
- "Komeilibacterales" (RIF6)
- "Kuenenbacterales"
- "Magasanikbacterales"
- "Uhrbacterales"
- "Veblenbacterales" (RIF39)
- Class "Paceibacteria"
- "Azambacterales"
- Clade "WO2-41-13" (RIF11)
- Clade UBA6257
- Clade UBA9983_A
- "Moranbacterales" (OD1-i)
- "Paceibacterales"
- "Parcunitrobacterales"
- "Portnoybacterales" (RIF22)
- "Ryanbacterales" (RIF10)
- "Spechtbacterales" (RIF19)
- "Sungbacterales" (RIF17)
- "Tagabacterales" (RIF12)
- "Terrybacterales" (RIF13)
- "Yanofskybacterales"
Clade "Thermotogida"
Phylum "Atribacterota"
- Class Atribacteria (OP9)
- Atribacterales Katayama et al. 2021
- Class "Caldatribacteriia"
- "Caldatribacteriales"
Phylum "Synergistota"
- Class Synergistia
- Synergistales Jumas-Bilak et al. 2009
Phylum "Dictyoglomota"
- Class Dictyoglomia
- Dictyoglomales Patel 2012
Phylum "Cryosericota"
- Class Caldisericia (OP5)
- Caldisericales Mori et al. 2009
- Class "Cryosericia"
- "Cryosericales"
Phylum "Calescamantes"
- Class "Calescibacteriia" (EM19)
- "Calescibacteriales"
Phylum "Thermodesulfobiota"
- Class "Thermodesulfobiia"
- "Thermodesulfobiales" Cavalier-Smith 2020
Phylum Coprothermobacterota
- Class Coprothermobacteria
- Coprothermobacterales Pavan et al. 2018
Phylum "Bipolaricaulota"
- Class "Bipolaricaulia"
- "Bipolaricaulales" (KB1 group, OP1)
- "Fraserbacterales" [GTDB tag: RIF31; RBG-16-55-9]
Phylum "Thermotogota"
| Phylogeny of Thermotogota[9][10][11] | |||||||||||||||
|
- Class Thermotogae
- Mesoaciditogales Itoh et al. 2016
- Petrotogales Bhandari & Gupta 2014 (Kosmotogales)
- Thermotogales Reysenbach 2002 emend. Bhandari & Gupta 2014
Hydrobacteria
Clade 1
Phylum Spirochaetota
| Phylogeny of Spirochaetota[9][10][11] | |||||||||||||||||||||||||||||||||
|
- Class Leptospiria
- Leptospirales Gupta et al. 2014
- "Turneriellales"
- Class "Brevinematia"
- Brevinematales Gupta et al. 2014
- Class "Brachyspirae"
- Brachyspirales corrig. Gupta et al. 2014
- Class Spirochaetia
- Borreliales
- Spirochaetales Buchanan 1917 emend. Gupta et al. 2013
Clade 2
Phylum "Poribacteria"
- Class "Entoporibacteria" Podell et al. 2019
- Class "Pelagiporibacteria" Podell et al. 2019
Phylum "Omnitrophica"
- Class "Omnitrophia" (OP3)
- "Omnitrophales"
Phylum "Aerophobetes"
- Class "Aerophobia" (CD12)
- "Aerophobales"
Phylum "Elusimicrobiota"
- Class "Elusimicrobia" (TG1)
- "Elusimicrobiales" Geissinger et al. 2010
- Class "Endomicrobia"
- "Endomicrobiales" Zheng et al. 2018
Clade "Fusobacterida"
Phylum "Muirbacteria"
- Class "Muirbacteriia"
- "Muirbacteriales"
Phylum "Riflebacteria"
- Class "Riflebacteriia"
- "Riflebacteriales"
- Class "Ozemobacteria"
- "Ozemobacterales" Kadnikov et al. 2018
Phylum Fusobacteria
- Class Fusobacteria
- Fusobacterales Staley & Whitman 2012
Clade Planctobacteria
Phylum "Sumerlaeota"
- Class "Sumerlaeia" Kadnikov et al. 2018
- "Sumerlaeales" Kadnikov et al. 2018
Phylum "Hydrogenedentes"
- Class "Hydrogenedentia" (NKB19)
- "Hydrogenedentiales"
Phylum "Saltatorellota"
- Class "Saltatorellae" Wiegand et al. 2019
- "Saltatorellales" Wiegand et al. 2019
Phylum "Planctomycetota"
| Phylogeny of Planctomycetota[9][10][11] | |||||||||||||||||||||||||||||||||||||||
|
- Class "Brocadiae"
- "Brocadiales" Jetten et al. 2010
- Class Phycisphaerae
- Phycisphaerales Fukunaga et al. 2010
- Sedimentisphaerales Spring et al. 2018
- Tepidisphaerales Kovaleva et al. 2015
- Class Planctomycetia
- Gemmatales Dedysh et al. 2020
- Isosphaerales Dedysh et al. 2020
- Pirellulales Dedysh et al. 2020
- Planctomycetales Schlesner & Stackebrandt 1987 em. Ward 2011
Phylum "Chlamydiota"
- Class Chlamydiae
- "Anoxychlamydiales" Dharamshi et al. 2019
- Chlamydiales Storz & Page 1971 em. Everett et al. 1999 (Parachlamydiales)
Phylum "Verrucomicrobiota"
| Phylogeny of Verrucomicrobiota[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||
|
- Class Oligosphaeria
- Oligosphaerales Qiu et al. 2013
- Class Lentisphaeria
- Lentisphaerales Cho et al. 2004
- Victivallales Cho et al. 2004
- Class Tichowtungiia
- Tichowtungiales Mu et al. 2020
- Class Kiritimatiellae
- Kiritimatiellales Spring et al. 2017
- Class "Verrucomicrobiia"
- "Chthoniobacterales" Sangwan et al. 2004 (Terrimicrobiales)
- Opitutales Choo et al. 2007 (Puniceicoccales)
- "Pedosphaerales"
- "Methylacidiphilales" Op den Camp 2009
- Verrucomicrobiales Ward-Rainey et al. 1996 em. Yoon et al. 2008
Clade FCB group
Phylum "Marinimicrobia"
(Candidate phylum SAR406; candidate phylum Marine Group A)
Phylum "Mcinerneyibacteriota"
- Class "Mcinerneyibacteria" Yadav et al. 2020
- "Mcinerneyibacteriales" Yadav et al. 2020
Phylum "Hydrothermota"
- Class "Stahlbacteria" (WOR-3)
- Class "Hydrothermia" Chuvochina et al. 2019
- "Hydrothermales" Chuvochina et al. 2019 (EM3)
- LBFQ01 ["Pyropristinus" Colman et al. 2016]
Phylum "Fermentibacteria"
- Class "Fermentibacteria" Kirkegaard 2016 ("Aegiribacteria")
- "Fermentibacterales" Kirkegaard 2016 (Hyd24-12)
Phylum "Cloacimonetes"
- Class "Cloacimonadia"
- "Cloacimonadales" (WWE1)
Phylum "Fibrobacterota"
- Class "Raymondbacteria" (RIF7)
- Class Chitinivibrionia
- Chitinivibrionales Sorokin et al. 2014 ("Chitinispirillales")
- Class Fibrobacteria
- Fibrobacterales Spain et al. 2012 ("Fibromonadales")
Phylum "Latescibacteria"
- Class "Latescibacteria"
- "Latescibacterales"
Phylum "Krumholzibacteriota"
- Class "Krumholzibacteriia" corrig. Youssef et al. 2019
- "Delphibacterales" (DOLZORAL124_64_63; LZORAL124-64-63)
- "Krumholzibacteriales" Youssef et al. 2019 (UBP1)
Phylum "Gemmatimonadota"
- Class "Glassbacteria" (RIF5)
- Class Gemmatimonadetes Zhang et al. 2003
- Gemmatimonadales Zhang et al. 2003
- Longimicrobiales Pascual et al. 2016
Phylum "Marinisomatota"
- Class "Marinisomatia"
- "Marinisomatales" (SAR406)
Phylum "Calditrichaeota"
- Class "Calditrichia" Cavalier-Smith 2020
- Calditrichales Kublanov et al. 2020
Phylum "Bacteroidota"
| Phylogeny of Bacteroidota[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Class "Kapabacteria" (OPB56)
- "Kapabacteriales"
- Class "Kryptonia"
- "Kryptoniales"
- Class Ignavibacteria
- Ignavibacteriales Iino et al. 2010
- Class "Chlorobia"
- Chlorobiales Gibbons & Murray 1978
- Class Rhodothermia
- Balneolales Munoz, Rossello-Mora & Amann 2016
- Rhodothermales Munoz, Rossello-Mora & Amann 2016
- Class Bacteroidia
- Bacteroidales Krieg 2012 [Marinilabiliales]
- Chitinophagales Munoz, Rossello-Mora & Amann 2017 [Saprospirales]
- Cytophagales Leadbetter 1974 [Cyclobacteriales]
- Flavobacteriales Bernardet 2012
- Sphingobacteriales Kämpfer 2012
Clade Proteobacteria
Phylum Nitrospirota_A
- Class "Leptospirillia"
- "Leptospirillales"
Phylum "Dependentiae"
- Class "Babeliae" Yeoh et al. 2016 (TM6)
- "Babelales"
Phylum Desulfobacterota G
- Class Syntrophorhabdia Waite et al. 2020
- Syntrophorhabdales Waite et al. 2020
Phylum SZUA-79
- Class SZUA-79
- "Acidulidesulfobacterales" corrig. Tan et al. 2019
Phylum "Thermosulfidibacteraeota"
- Class "Thermosulfidibacteria"
- "Thermosulfidibacterales" Cavalier-Smith 2020
Phylum "Chrysiogenetota"
- Class Chrysiogenetes Garrity & Holt 2002
- Chrysiogenales Garrity & Holt 2002
Phylum "Deferribacterota"
- Class Deferribacteres Huber & Stetter 2002 em. Jumas-Bilak et al. 2009
- Deferribacterales Huber & Stetter 2002
Phylum "Aquificota"
| Phylogeny of Aquificota[9][10][11] | |||||||||||||||
|
- Class "Desulfurobacteriia"
- Desulfurobacteriales Gupta & Lali 2014
- Class "Aquificia"
- Aquificales Reysenbach 2002 emend. Gupta & Lali 2013
- "Hydrogenothermales"
Phylum "Campylobacterota"
- Class Desulfurellia
- Desulfurellales Kuever, Rainey & Widdel 2006
- Class "Campylobacteria"
- Campylobacterales Garrity, Bell & Lilburn 2006
- Nautiliales Miroshnichenko et al. 2004
Phylum "Acidobacteriota"
| Phylogeny of Acidobacteriota[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Class "Fischerbacteria" (RIF25)
- Class "Guanabacteria" Tschoeke et al. 2020
- Class Thermoanaerobaculia Dedysh & Yilmaz 2018
- Thermoanaerobaculales Dedysh & Yilmaz 2018
- Class Holophagae
- Acanthopleuribacterales Fukunaga et al. 2008
- Holophagales Fukunaga et al. 2008
- Thermotomaculales Dedysh & Yilmaz 2018
- Class "Aminicenantia"
- "Aminicenantales" Kadnikov et al. 2019 (OP8)
- Class Vicinamibacteria Dedysh & Yilmaz 2018
- Vicinamibacterales Dedysh & Yilmaz 2018
- Class Blastocatellia Pascual et al. 2016
- Blastocatellales Pascual et al. 2016
- "Chloracidobacteriales"
- Class Acidobacteria
- Acidobacteriales Cavalier-Smith 2002
- "Acidoferrales" Epihov et al. 2021
- Bryobacterales Dedysh & Yilmaz 2018
Phylum "Modulibacteria"
- Class "Moduliflexia" Sekiguchi et al. 2015 (KSB3)
- "Moduliflexales" Sekiguchi et al. 2015
Phylum "Methylomirabilaeota"
- Class "Rokubacteria" Hug et al. 2016 (CSP1-6)
- "Rokubacteriales"
- Class "Methylomirabilia"
- ""Methylomirabilales"
Phylum "Tectomicrobia"
- Class "Entotheonellia"
- "Entotheonellales" Schmidt et al. 2000
Phylum "Nitrospinae"
- Class "Nitrospinia" Lucker et al. 2013
- "Nitrospinales" Lucker et al. 2013
Phylum "Nitrospirota"
- Class "Thermodesulfovibrionia" Umezawa et al. 2021
- "Thermodesulfovibrionales" Umezawa et al. 2021
- Class "Nitrospiria Oren et al. 2015
- "Nitrospirales" Garrity & Holt 2001
Phylum "Deferrisomatota"
- Class "Deferrisomatia" Waite et al. 2020
- Deferrisomatales Waite et al. 2020
Phylum "Desulfobacterota"
| Phylogeny of Desulfobacterota[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- ?"Anaeroferrophillales" Murphy et al. 2021
- ?"Zymogeniales" Murphy et al. 2021
- Class Desulfuromonadia Waite et al. 2020
- Desulfuromonadales corrig. Kuever, Rainey & Widdel 2006
- Geobacterales Waite et al. 2020
- Class Syntrophia Waite et al. 2020
- Syntrophales Waite et al. 2020
- Class Desulfomonilia Waite et al. 2020
- Desulfomonilales Waite et al. 2020
- Class Dissulfuribacteria Waite et al. 2020
- Dissulfuribacterales Waite et al. 2020
- Class Thermodesulfobacteriia Hatchikian, Ollivier & Garcia 2002 em. Cavalier-Smith 2020
- Thermodesulfobacteriales Hatchikian, Ollivier & Garcia 2002
- Class Desulfobulbia Waite et al. 2020
- Desulfobulbales Waite et al. 2020
- Class Desulfovibrionia Waite et al. 2020
- Desulfovibrionales Kuever, Rainey & Widdel 2006
- Class Desulfofervidia Waite et al. 2020
- "Desulfofervidales" Waite et al. 2020
- Class Desulfarculia Waite et al. 2020
- Desulfarculales corrig. Kuever, Rainey & Widdel 2006
- Class Desulfobaccia Waite et al. 2020
- "Adiutricales" Waite et al. 2020
- Desulfobaccales Waite et al. 2020
- Class Syntrophobacteria Waite et al. 2020
- Syntrophobacterales Waite et al. 2020
- Class Desulfobacteria Waite et al. 2020
- Desulfatiglanales Waite et al. 2020
- Desulfobacterales Kuever, Rainey & Widdel 2006
Phylum "Bdellovibrionota"
| Phylogeny of Bdellovibrionota[9][10][11] | |||||||||||||||||||||
|
- Class Oligoflexia Nakai et al. 2014
- Oligoflexales Nakai et al. 2014
- Silvanigrellales Hahn et al. 2017
- Class Bacteriovoracia Waite et al. 2020
- Bacteriovoracales Hahn et al. 2017
- Class Bdellovibrionia Waite et al. 2020
- Bdellovibrionales Garrity, Bell & Lilburn 2006
Phylum "Binatota"
- Class "Binatia" Chuvochina et al. 2019
- "Binatales" Chuvochina et al. 2019
Phylum "Myxococcota"
| Phylogeny of Myxococcota[9][10][11] | |||||||||||||||||||||
|
- Class "Bradymonadia"
- Bradymonadales Wang et al. 2015
- Class Polyangia Waite et al. 2020
- Haliangiales Waite et al. 2020
- Polyangiales Tchan, Pochon & Prevot 1948
- Class Myxococcia Waite et al. 2020
- Myxococcales (fruiting gliding bacteria)
Phylum SAR324
- Class Lambdaproteobacteria Anantharaman et al. 2016
Phylum Proteobacteria s.s.
| Phylogeny of Proteobacteria s.s.[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||
|
| Phylogeny of Rickettsiidae | |||||||||||||||||||||
|
| Phylogeny of Rhodobacteriae | |||||||||||||||
|
| Phylogeny of Caulobacteridae | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
| Phylogeny of Pseudomonadidae | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
- Class "Magnetococcia" Parks et al. 2018
- Magnetococcales Bazylinski et al. 2013
- Class "Mariprofundia" Cavalier-Smith 2020 ["Zetaproteobacteria"]
- Mariprofundales Makita et al. 2017
- Class Alphaproteobacteria
- Sublass Rickettsiidae Ferla et al. 2013
- Clade 1604HC
- "Deianiraeaceae" Castelli et al. 2019 {Rickettsiales_A}
- Holosporales Szokoli et al. 2016
- Rickettsiales Gieszczykiewicz 1939 emend. Dumler et al. 2001
- Sublass Rhodobacteriae
- Bartonellaceae Gieszczykiewicz 1939 {Rhizobiales_A}
- "Pelagibacterales" Grote et al. 2012
- Rhodobacterales Garrity, Bell & Lilburn 2006
- Sublass Caulobacteridae Ferla et al. 2013
- Clade UBA8366
- "Acetobacterales"
- "Caedimonadales"
- "Azospirillales"
- Caulobacterales Henrici & Johnson 1935 (Hyphomonadales; Maricaulales; Parvularculales)
- "Dongiales"
- "Elsterales"
- "Ferrovibrionales"
- "Geminicoccales"
- Hyphomicrobiales Douglas 1957 (Rhizobiales)
- Kiloniellales Wiese et al. 2009
- Micropepsales Harbison et al. 2016
- "Micavibrionales"
- Minwuiales Sun et al. 2018
- "Paracaedibacterales"
- "Parvibaculales"
- "Puniceispirillales"
- "Reyranellales"
- Rhodospirillales Pfennig & Truper 1971
- Sphingomonadales Yabuuchi & Kosako 2006 (Emcibacterales; Iodidimonadales; Kordiimonadales; Rhodothalassiales)
- Sneathiellales Kurahashi et al. 2008
- Stellaceae Hördt et al. 2020 {ATCC43930}
- Tagaea Jean et al. 2016 {CACIAM-22H2: CACIAM-22H2}
- "Thalassobaculales"
- "Tistrellales"
- "Zavarziniales"
- Sublass Rickettsiidae Ferla et al. 2013
- Class Gammaproteobacteria
- ?"Ferritrophicales" Weiss et al. 2007
- ?"Kopriimonadales" Kwon et al. 2005c
- "Thiohalorhabdales"
- Subclass "Acidithiobacillidae" Cavalier-Smith 2020
- Acidithiobacillales Garrity, Bell & Lilburn 2005
- Subclass "Neisseriidae" Cavalier-Smith 2020 (Betaproteobacteria)
- Burkholderiales Garrity, Bell & Lilburn 2006 ("Ferrovales"; "Gallionellales"; Hydrogenophilales; Methylophilales; Neisseriales; Nitrosomonadales; "Procabacteriales"; Rhodocyclales; Spirillales; Sulfuricellales)
- Subclass "Pseudomonadidae" Cavalier-Smith 2020
- Clade SZUA-21
- Acidiferrobacterales Kojima, Shinohara & Fukui 2015
- Aquicella Santos et al. 2004 {DSM-16500: DSM-16500}
- Arenicellales Teramoto, Yagyu & Nishijima 2015
- Beggiatoales Buchanan 1957
- "Berkiellales"
- Cardiobacteriales Garrity, Bell & Lilburn 2005
- Chromatiales Imhoff 2005
- "Competibacterales"
- "Coxiellales"
- "Diplorickettsiales"
- "Ectothiorhodospirales"
- Enterobacteriaceae_A
- Enterobacterales Adeolu et al. 2016 (Aeromonadales; Alteromonadales; Kangiellales; Orbales; Pasteurellales; Vibrionales)
- "Evansiales"
- "Francisellales"
- "Granulosicoccales"
- "Halofilales"
- "Halothiobacillales"
- Immundisolibacterales Corteselli, Aitken & Singleton 2017
- Inmirania Slobodkina et al. 2016 {DSM-100275: DSM-100275}
- Legionellales Garrity, Bell & Lilburn 2005
- Methylococcales Bowman 2005
- "Ca. Macondimonas" Karthikeyan et al. 2019 {UBA5335: UBA5335}
- Nevskiales Naushad et al. 2015 ("Salinisphaerales")
- "Nitrococcales"
- "Nitrosococcales"
- Pelagibaculum Knobloch et al. 2019 {HP12: HP12}
- "Piscirickettsiales"
- "Porisulfidales"
- Pseudomonadales Orla-Jensen 1921 (Cellvibrionales; Moraxellales; Oceanospirillales)
- "Steroidobacterales"
- "Tenderiales"
- Thioalbus Park et al. 2011 {DSM-26407: DSM-26407}
- "Thioglobaceae" {PS1}
- "Thiohalobacterales"
- "Thiohalomonadales"
- "Thiohalospirales"
- "Thiomicrospirales"
- Thiotrichales Garrity, Bell & Lilburn 2005
- "Woeseiales"
- Xanthomonadales Saddler & Bradbury 2005 non Chadefaud 1950a (Lysobacterales)
List of Candidate Phyla
- "Endoecteinascidia"
- "Fervidibacteria" Rinke et al. 2013 (OctSpa1-106)
- "Moisslbacteria" Probst et al. 2018
- "Salinosulfoleibacteria" Tazi et al. 2006
- "Teskebacteria" Dojka 1998 (WS1)
See also
- Branching order of bacterial phyla (Woese, 1987)
- Branching order of bacterial phyla (Gupta, 2001)
- Branching order of bacterial phyla (Cavalier-Smith, 2002)
- Branching order of bacterial phyla (Rappe and Giovanoni, 2003)
- Branching order of bacterial phyla (Battistuzzi et al.,2004)
- Branching order of bacterial phyla (Ciccarelli et al., 2006)
- Branching order of bacterial phyla after ARB Silva Living Tree
- Branching order of bacterial phyla (Genome Taxonomy Database, 2018)
- Bacterial phyla
- List of Archaea genera
- List of bacteria genera
- LPSN, list of accepted bacterial and archaeal names
- Human microbiome project
- Microorganism
References
- ↑ J.P. Euzéby. "Bacteria". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-06-27.
- ↑ Sayers; et al. "Bacteria". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
- ↑ All-Species Living Tree Project."16S rRNA-based LTP release 132". Silva Comprehensive Ribosomal RNA Database. Retrieved 2020-08-20.
- ↑ Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life". Nature Biotechnology. 36 (10): 996–1004. bioRxiv 10.1101/256800. doi:10.1038/nbt.4229. PMID 30148503. S2CID 52093100.
- ↑ Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology. 38 (9): 1079–1086. bioRxiv 10.1101/771964. doi:10.1038/s41587-020-0501-8. PMID 32341564. S2CID 216560589.
- ↑ Chaumeil, PA; Mussig, AJ; Hugenholtz, P; Parks, DH (15 November 2019). "GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database". Bioinformatics. doi:10.1093/bioinformatics/btz848. PMC 7703759. PMID 31730192.
- ↑ Almeida, Alexandre; Nayfach, Stephen; Boland, Miguel; Strozzi, Francesco; Beracochea, Martin; Shi, Zhou Jason; Pollard, Katherine S.; Sakharova, Ekaterina; Parks, Donovan H.; Hugenholtz, Philip; Segata, Nicola; Kyrpides, Nikos C.; Finn, Robert D. (20 July 2020). "A unified catalog of 204,938 reference genomes from the human gut microbiome". Nature Biotechnology. doi:10.1038/s41587-020-0603-3. PMC 7801254. PMID 32690973.
- ↑ Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T. B. K.; Nielsen, Torben; Kirton, Edward; Faria, José P.; Edirisinghe, Janaka N.; Henry, Christopher S.; Jungbluth, Sean P.; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam P.; Tringe, Susannah G.; Visel, Axel; Woyke, Tanja; Mouncey, Nigel J.; Ivanova, Natalia N.; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A. (9 November 2020). "A genomic catalog of Earth's microbiomes". Nature Biotechnology. doi:10.1038/s41587-020-0718-6. PMC 8041624.
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 "GTDB release 06-RS202". Genome Taxonomy Database. Retrieved 6 December 2021.
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 "ar122_r202.sp_label". Genome Taxonomy Database. Retrieved 6 December 2021.
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 "Taxon History". Genome Taxonomy Database. Retrieved 6 December 2021.
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