Tumebacillus

Tumebacillus is a genus of Gram-positive, rod-shaped, spore-forming bacteria. Members of the genus can be motile or non-motile,[1] and form white or yellow colonies on R2A agar.[2]

Tumebacillus
Scientific classification
Domain:
Bacteria
Division:
Bacillota
Class:
Bacilli
Order:
Bacillales
Family:
Alicyclobacillaceae
Genus:
Tumebacillus

Steven et al. 2008
Type species
Tumebacillus permanentifrigoris
Steven et al. 2008
Species

The genus was first proposed in 2008 from the discovery of a potentially 5000-7000 year-old bacterium from Canadian high arctic permafrost, which would become the type strain of the genus T. permanentifrigoris. The genus name was derived from Latin tume (from tumefacere, to make swollen) and bacillus (small rod), referring to the swollen sporangia produced by T. permanentifrigoris and the shape of the cells.[3]

Members of this genus have been isolated from arctic permafrost, soil samples, cassava wastewater, decomposing algal scum, river water, and the gut of a vulture.[1] Tumebacillus was found during surveys of nasal airways of infants, an underground subway in Norway, and a mountain observatory in Austria.[4][5][6]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[7] and National Center for Biotechnology Information (NCBI)[8]

16S rRNA based LTP_01_2022[9][10][11] 120 marker proteins based GTDB 07-RS207[12][13][14]
 
 
 

T. ginsengisoli Baek et al. 2011

 
 
 

T. lipolyticus Prasad et al. 2015

 
 
 

T. algifaecis Wu et al. 2015

 
 

T. avium Sung et al. 2018

 
 
 
 
 
 
 

T. luteolus Her, Srinivasan & Lee 2015

 
 

T. soli Kim & Kim 2016

 
 
 
 

T. flagellatus Wang et al. 2013

 
 

T. permanentifrigoris Steven et al. 2008

 
 
 
 
 
 
 

T. algifaecis

 
 

T. avium

 
 
 
 

T. flagellatus

 
 

T. permanentifrigoris

 
 
 

See also

References
  1. Sung, Hojun; Kim, Hyun Sik; Lee, June-Young; Kang, Woorim; Kim, Pil Soo; Hyun, Dong-Wook; Tak, Euon Jung; Jung, Mi-Ja; Yun, Ji-Hyun; Kim, Min-Soo; Shin, Na-Ri; Whon, Tae Woong; Rho, Jeong Rae; Park, Sun Duk; Shim, Hyung Eun; Bae, Jin-Woo (1 May 2018). "Tumebacillus avium sp. nov., isolated from the gut of a cinereous vulture, Aegypius monachus". International Journal of Systematic and Evolutionary Microbiology. 68 (5): 1659–1664. doi:10.1099/ijsem.0.002725. PMID 29561257.
  2. Kim, Jong-Hwa; Kim, Wonyong (10 June 2016). "Tumebacillus soli sp. nov., isolated from non-rhizosphere soil". International Journal of Systematic and Evolutionary Microbiology. 66 (6): 2192–2197. doi:10.1099/ijsem.0.001009. PMID 26956136.
  3. Steven, B.; Chen, M. Q.; Greer, C. W.; Whyte, L. G.; Niederberger, T. D. (1 June 2008). "Tumebacillus permanentifrigoris gen. nov., sp. nov., an aerobic, spore-forming bacterium isolated from Canadian high Arctic permafrost". International Journal of Systematic and Evolutionary Microbiology. 58 (6): 1497–1501. doi:10.1099/ijs.0.65101-0. PMID 18523202.
  4. Hasegawa, Kohei; Linnemann, Rachel W.; Mansbach, Jonathan M.; Ajami, Nadim J.; Espinola, Janice A.; Petrosino, Joseph F.; Piedra, Pedro A.; Stevenson, Michelle D.; Sullivan, Ashley F.; Thompson, Amy D.; Camargo, Carlos A. (November 2017). "Nasal Airway Microbiota Profile and Severe Bronchiolitis in Infants". The Pediatric Infectious Disease Journal. 36 (11): 1044–1051. doi:10.1097/INF.0000000000001500. PMC 5479744. PMID 28005692.
  5. Dybwad, Marius; Granum, Per Einar; Bruheim, Per; Blatny, Janet Martha (15 March 2012). "Characterization of Airborne Bacteria at an Underground Subway Station". Applied and Environmental Microbiology. 78 (6): 1917–1929. doi:10.1128/AEM.07212-11. PMC 3298144. PMID 22247150.
  6. Els, Nora; Larose, Catherine; Baumann-Stanzer, Kathrin; Tignat-Perrier, Romie; Keuschnig, Christoph; Vogel, Timothy M.; Sattler, Birgit (4 September 2019). "Microbial composition in seasonal time series of free tropospheric air and precipitation reveals community separation". Aerobiologia. 35 (4): 671–701. doi:10.1007/s10453-019-09606-x.
  7. A.C. Parte; et al. "Tumebacillus". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
  8. Sayers; et al. "Tumebacillus". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
  9. "The LTP". Retrieved 23 February 2022.
  10. "LTP_all tree in newick format". Retrieved 23 February 2022.
  11. "LTP_01_2022 Release Notes" (PDF). Retrieved 23 February 2022.
  12. "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
  13. "bac120_r207.sp_labels". Genome Taxonomy Database. Retrieved 20 June 2022.
  14. "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
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